Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j01
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    23   6.7  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    23   8.8  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    23   8.8  

>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 123 NRLVIADITVCNLLXASMRSHXXXXFCT 206
           +R+V  DI +C L   S  +H     CT
Sbjct: 52  SRIVHPDIQLCKLEGKSTSAHLNLTLCT 79


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 143 VRNYEAVAADAHRPVTXPEIV 81
           +R YEA  A    P   PEIV
Sbjct: 110 IRKYEAELAAGKTPTIDPEIV 130


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 147 LCPQLRGGCSGCPS 106
           LCP LRG    CP+
Sbjct: 75  LCPMLRGENRACPN 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,916
Number of Sequences: 5004
Number of extensions: 7401
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)