Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j01
         (262 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   5.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   5.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    19   7.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 6/36 (16%), Positives = 18/36 (50%)
 Frame = +3

Query: 96  SYRAMGIRCNRLVIADITVCNLLXASMRSHXXXXFC 203
           SY  + ++C+ +  ++   CN    +++ +    +C
Sbjct: 76  SYHRINLKCSLVEFSENKNCNAGSLTVKKNFANKYC 111


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 104 GDGHPLQPPRNCG 142
           G GH LQPP   G
Sbjct: 328 GMGHGLQPPDLAG 340


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = -2

Query: 120 SGCPSPCNXXRNC 82
           SG P PC     C
Sbjct: 473 SGLPEPCRCHARC 485


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 262 IFFFFFFXXDXISKXRKFTVQ 200
           I +F F   + + + R+FT++
Sbjct: 19  INYFIFLYFNSLVRFRRFTIE 39


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = -2

Query: 120 SGCPSPCNXXRNC 82
           SG P PC     C
Sbjct: 473 SGLPEPCRCHARC 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,961
Number of Sequences: 438
Number of extensions: 522
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)