Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15i23
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.26 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.8  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.8  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 547 FLTCLYA*FQTFWTDCNTRIYTLQYLQKVSDNLWG 651
           F  C    F   + D   ++Y   + Q+ S NLWG
Sbjct: 455 FFICPSIHFAQLFADRGMKVYYYFFTQRTSTNLWG 489


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 565 HIDTSRSRSFVAKALKINAQEIQVPVIG-GHSDKTIIPLFSNLTPRNY 425
           H   S ++    K   + AQ + +  +   H D+TI P+FS L    Y
Sbjct: 84  HYQMSGAKQKKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEY 131


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 369 VPAFLTSLVNISAWH 413
           VP+F+   V + +WH
Sbjct: 126 VPSFVADFVKVLSWH 140


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 73  LRISLLLALHDLKLVYSDLTGSFQIHS*ESDNMLE*FRAVQ 195
           LR+ L LA+HD   + S        H  +   +L+ F+ VQ
Sbjct: 128 LRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQ 168


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 73  LRISLLLALHDLKLVYSDLTGSFQIHS*ESDNMLE*FRAVQ 195
           LR+ L LA+HD   + S        H  +   +L+ F+ VQ
Sbjct: 96  LRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQ 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,744
Number of Sequences: 438
Number of extensions: 4798
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)