Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15i22
(455 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 185 6e-47
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 185 6e-47
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 185 6e-47
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 185 6e-47
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 126 5e-29
BC037990-1|AAH37990.1| 894|Homo sapiens THADA protein protein. 31 1.9
AY149633-1|AAO46789.1| 958|Homo sapiens death receptor interact... 31 1.9
AY149632-1|AAO46788.1| 1063|Homo sapiens death receptor interact... 31 1.9
AY149631-1|AAO46787.1| 1063|Homo sapiens death receptor interact... 31 1.9
AY149630-1|AAO46786.1| 1097|Homo sapiens death receptor interact... 31 1.9
AY149629-1|AAO46785.1| 1953|Homo sapiens death receptor interact... 31 1.9
AK126004-1|BAC86389.1| 937|Homo sapiens protein ( Homo sapiens ... 31 1.9
AC092615-1|AAX93152.1| 894|Homo sapiens unknown protein. 31 1.9
AB051554-1|BAB21858.2| 1960|Homo sapiens KIAA1767 protein protein. 31 1.9
M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein. 29 10.0
AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen pr... 29 10.0
AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen pr... 29 10.0
AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen pr... 29 10.0
AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1 p... 29 10.0
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 185 bits (451), Expect = 6e-47
Identities = 90/108 (83%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Frame = -1
Query: 323 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVE
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVE 111
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 185 bits (451), Expect = 6e-47
Identities = 90/108 (83%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Frame = -1
Query: 323 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVE
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVE 111
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 185 bits (451), Expect = 6e-47
Identities = 90/108 (83%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Frame = -1
Query: 323 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVE
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVE 111
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 185 bits (451), Expect = 6e-47
Identities = 90/108 (83%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Frame = -1
Query: 323 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVE
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVE 111
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 126 bits (303), Expect = 5e-29
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = -1
Query: 185 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 6
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60
>BC037990-1|AAH37990.1| 894|Homo sapiens THADA protein protein.
Length = 894
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 676 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 730
>AY149633-1|AAO46789.1| 958|Homo sapiens death receptor interacting
protein splice variant protein.
Length = 958
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 386 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 440
>AY149632-1|AAO46788.1| 1063|Homo sapiens death receptor
interacting/7p fusion protein protein.
Length = 1063
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 386 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 440
>AY149631-1|AAO46787.1| 1063|Homo sapiens death receptor
interacting/3p fusion protein splice variant protein.
Length = 1063
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 386 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 440
>AY149630-1|AAO46786.1| 1097|Homo sapiens death receptor
interacting/3p fusion protein protein.
Length = 1097
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 386 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 440
>AY149629-1|AAO46785.1| 1953|Homo sapiens death receptor interacting
protein protein.
Length = 1953
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 676 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 730
>AK126004-1|BAC86389.1| 937|Homo sapiens protein ( Homo sapiens
cDNA FLJ44016 fis, clone TESTI4025797. ).
Length = 937
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 676 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 730
>AC092615-1|AAX93152.1| 894|Homo sapiens unknown protein.
Length = 894
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 676 PGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKN 730
>AB051554-1|BAB21858.2| 1960|Homo sapiens KIAA1767 protein protein.
Length = 1960
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 PGVSQCLCLTLQRLPCCLLNSGRDKQLFNQKLFSAEPE----KPHVSVTFEREKN 454
PGV Q +C L++L C + S + Q EPE K H SV+ ++ KN
Sbjct: 683 PGVRQQICSLLKKLFCRIQESSQILYKLEQSKSKREPENELTKQHPSVSLQQYKN 737
>M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein.
Length = 269
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 203 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 30
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 203 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 30
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 203 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 30
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 203 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 30
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1
protein.
Length = 255
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 203 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 30
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 1 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,320,404
Number of Sequences: 237096
Number of extensions: 1634491
Number of successful extensions: 3334
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3334
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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