Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15i17
(870 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 27 0.17
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 25 1.2
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 25 1.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 1.6
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 23 4.8
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 23 4.8
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 6.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 8.5
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 8.5
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 27.5 bits (58), Expect = 0.17
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = -3
Query: 757 DNACFLKDNDTFFSMKDFKKYSLVQQQAHLIETVTKVFDVVHKDTGKYFSVLCNIRCHED 578
+NAC LK+ + F D+ YS V + + K K+ F + C++
Sbjct: 482 ENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLK-----EKENEIDFKIEVTEDCNK- 535
Query: 577 QLNKNLHNSLRVSQVFDDTNKRLMSA 500
N L + Q++ DT+ +L+ A
Sbjct: 536 SFNDLLTQVAELDQIYADTHAKLVQA 561
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 24.6 bits (51), Expect = 1.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 529 DDTNKRLMSAFLDISNGKEGIYFLAVNIKERSCNIAVMKCYFSSYLVQNGTDD 371
+D ++ + + ISN K +FLA ++E +C + + QNG D
Sbjct: 436 EDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQNGRKD 488
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/32 (25%), Positives = 21/32 (65%)
Frame = -3
Query: 718 SMKDFKKYSLVQQQAHLIETVTKVFDVVHKDT 623
++ +FK ++ Q + H+ +T+ K+ + + +DT
Sbjct: 162 NITNFKNSNIFQLKQHMRDTMNKIAETLDEDT 193
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.2 bits (50), Expect = 1.6
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 4/151 (2%)
Frame = -3
Query: 715 MKDFKKYSLVQQQAHLIETVTKVFDVVHKDTGKYFSVLCNIRCHEDQL----NKNLHNSL 548
M+ Y QQQ H ++ ++ H + F +++ H+ Q K L ++
Sbjct: 92 MQQHSLYLQQQQQQHHQDSSSE-----HASNQERFGYFSSLKDHQHQFAELGRKKLEQAI 146
Query: 547 RVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVNIKERSCNIAVMKCYFSSYLVQNGTDDQ 368
+ Q N + L ++ K+ L ++ I ++ S YL+Q G Q
Sbjct: 147 QQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQQQRLIQQLQITQSQYLLQQGLGLQ 206
Query: 367 QNEPTNLLDLQFYSPEYLSVITTHPENEENT 275
+ P++ L P + S + PE+ +N+
Sbjct: 207 GHNPSSGLQPGEGLPMWKSDTSDGPESHQNS 237
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 4.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 91 IIITINFHFKYSNFSRTF*KDNSNFTTSRN 180
II +++ ++KYSN++ N+N+ + N
Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 4.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 91 IIITINFHFKYSNFSRTF*KDNSNFTTSRN 180
II +++ ++KYSN++ N+N+ + N
Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.2 bits (45), Expect = 6.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -2
Query: 89 KTILSIQHHNLLENFKTHL 33
+ + +Q +NLLE TH+
Sbjct: 307 RDLCDVQRYNLLETIATHM 325
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 92 MKTILSIQHHNLLENFKTH 36
MK + + HH E+F H
Sbjct: 354 MKNVTIVDHHTASESFMKH 372
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/44 (20%), Positives = 23/44 (52%)
Frame = -3
Query: 571 NKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVNIKE 440
NK +HN+ +++ N + + +N + +Y+ +NI++
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 8.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 117 QIL*LFENFLKG*QQLYDLQKLLIL 191
+IL +FE +L+G QQ+ Q+ L++
Sbjct: 644 KILSVFEPYLEGKQQMTVFQRTLMV 668
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,058
Number of Sequences: 438
Number of extensions: 4808
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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