Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15i13
         (210 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   1.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   1.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   2.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   2.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   3.7  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   4.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    19   6.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   8.5  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 200 RQTMELRKHDCRSPTLLRKFPSESLFVGGNTKINSATG-SKDYHIIY*QSYFYE*MKVYK 24
           R+T + R  D R+     K P     +  N K ++    + +Y+  Y  +Y     K+YK
Sbjct: 60  RETSKERSQD-RTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118

Query: 23  NY 18
           NY
Sbjct: 119 NY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 200 RQTMELRKHDCRSPTLLRKFPSESLFVGGNTKINSATG-SKDYHIIY*QSYFYE*MKVYK 24
           R+T + R  D R+     K P     +  N K ++    + +Y+  Y  +Y     K+YK
Sbjct: 60  RETSKERSQD-RTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118

Query: 23  NY 18
           NY
Sbjct: 119 NY 120


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 143 IFAAKWGFGSHVC 181
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 143 IFAAKWGFGSHVC 181
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 143 IFAAKWGFGSHVC 181
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 108 SVTTDEQTFTWE 143
           S TTDE  F W+
Sbjct: 185 SHTTDEMIFQWD 196


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 125 FVGGNTKIN 99
           FVGGN K+N
Sbjct: 6   FVGGNWKMN 14


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -3

Query: 208 KTCDKPWSYANMTAEAPLCCENSQVKVCS 122
           K C  P+   +++    +   ++ +KVCS
Sbjct: 108 KNCVNPYDRDSLSCWLQMTKHHNFIKVCS 136


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +2

Query: 2  TVRFIYNFYRLSFIRKNNSVNKLYGSL 82
          T+  IY+   L     N    +LY  L
Sbjct: 15 TLHIIYSVAGLKIFEANPDTKRLYDDL 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,727
Number of Sequences: 438
Number of extensions: 794
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)