Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15i04
         (828 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209991-1|BAE06073.1| 1287|Homo sapiens BCR variant protein pro...    32   2.9  
BC051694-1|AAH51694.1|  677|Homo sapiens similar to KIAA1680 pro...    30   8.9  
AB051467-1|BAB21771.1|  902|Homo sapiens KIAA1680 protein protein.     30   8.9  

>AB209991-1|BAE06073.1| 1287|Homo sapiens BCR variant protein
           protein.
          Length = 1287

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = -3

Query: 379 PPVQLGPCPVLGRPCTVPDGFARMYKTAALPTQPPSYSDAGKVCCSKEYERIKKAIREYM 200
           P  Q G     GR    P GFA  +K     ++PP           +E ER K +IR   
Sbjct: 3   PRAQPGGAGKAGRAMVDPVGFAEAWKAQFPDSEPPRMELRSVGDIEQELERCKASIRRLE 62

Query: 199 KKDKDDDFRCV 167
           ++   + FR +
Sbjct: 63  QEVNQERFRMI 73


>BC051694-1|AAH51694.1|  677|Homo sapiens similar to KIAA1680
           protein protein.
          Length = 677

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 796 VGCCCQKLGQIQIETERQKSTKSIPQTSNAQYKEIMNSLVYLADTS 659
           V C     G+ ++E +    + S+P+TS A  KE++  +  L  TS
Sbjct: 314 VPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAELPATS 359


>AB051467-1|BAB21771.1|  902|Homo sapiens KIAA1680 protein protein.
          Length = 902

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 796 VGCCCQKLGQIQIETERQKSTKSIPQTSNAQYKEIMNSLVYLADTS 659
           V C     G+ ++E +    + S+P+TS A  KE++  +  L  TS
Sbjct: 316 VPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAELPATS 361


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,157,516
Number of Sequences: 237096
Number of extensions: 1838987
Number of successful extensions: 4756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4756
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)