Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15i04
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.4  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   4.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.0  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 280 PPSYSDAGKVCCSKEYERIKKAIREYMKKDKDDDFRCVNKFNVDTERRCCDKEQ 119
           P + +   K C  K+ E IKK I+  ++   +      NK++ D + R   +E+
Sbjct: 69  PDALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEE 122


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 280 PPSYSDAGKVCCSKEYERIKKAIREYMKKDKDDDFRCVNKFNVDTERRCCDKEQ 119
           P + +   K C  K+ E IKK I+  ++   +      NK++ D + R   +E+
Sbjct: 69  PDALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEE 122


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 280 PPSYSDAGKVCCSKEYERIKKAIREYMKKDKDDDFRCVNKFNVDTERRCCDKEQ 119
           P + +   K C  K+ E IKK I+  ++   +      NK++ D + R   +E+
Sbjct: 69  PDALATDCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKFRVKFEEE 122


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 238 EYERIKKAIREYMKKDKDDDFRCVNKFNVDTE 143
           E+++I+    +   +D DD + CV ++N   E
Sbjct: 511 EFQKIELKQCDEFVEDSDDYWNCVIQYNTRAE 542


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 102 VNGKRRCSLSQQRRSVSTLNLL 167
           +  ++R SLS++RR+  TL ++
Sbjct: 311 IEERQRISLSKERRAARTLGVI 332


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 102 VNGKRRCSLSQQRRSVSTLNLL 167
           +  ++R SLS++RR+  TL ++
Sbjct: 311 IEERQRISLSKERRAARTLGVI 332


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 102 VNGKRRCSLSQQRRSVSTLNLL 167
           +  ++R SLS++RR+  TL ++
Sbjct: 311 IEERQRISLSKERRAARTLGVI 332


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 27   NQSCFFSSLNFSCMDSLCEPQQDLPVNGKRRCSLSQQ 137
            + S F+SS  +   +S C P Q  P       S+ QQ
Sbjct: 954  SSSSFYSSFLYKSSESSCNPDQK-PTEYLLEDSMKQQ 989


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 171 VLISLMWIQSVVAAIRSSVSF 109
           +++S  WI SVV ++  ++ F
Sbjct: 155 IMLSFAWIGSVVCSLPQTIVF 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,314
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)