Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15i02
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 2.1
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.6
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 25 3.6
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 24 6.3
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 24 6.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 6.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 6.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 24 8.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 8.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 8.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 8.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 8.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 8.3
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 24 8.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 8.3
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 24 8.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 8.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 8.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 8.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 8.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 8.3
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 191 NNPKDVDFSNNPCKIPGAVDKPY 259
NNP++V+ + P +IP ++ PY
Sbjct: 370 NNPQNVNNGSTPIQIPVSLQTPY 392
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 269 EKFYKACQLHREFYKGYSKSPHPLDYFNES 180
EKF KAC+ E K Y +S ++ +E+
Sbjct: 349 EKFLKACKDLEEVSKSYEESREEIEALHET 378
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 62 YQWFVQSMLVTLLVIYT*YDMVENLNIS 145
Y WF+ +LVTLLV Y + + NL +S
Sbjct: 263 YSWFIVVLLVTLLV-YIVGEYLTNLYMS 289
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 146 PIYLSFPPYHIKYKSPAALPTSTGRT 69
P+Y +F PY+++ + A P S +T
Sbjct: 383 PLYNAFLPYYLETRGNANEPLSVAKT 408
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 24.2 bits (50), Expect = 6.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 188 NESPYKWQCPPEISPIYLSFPPYHIKYKSPAALPTSTGRTID 63
N PY PPE +P FPP + K P + + T D
Sbjct: 388 NTLPYTPVFPPESAPAASIFPP-RLTSKQPIPMASPAKLTSD 428
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -2
Query: 269 EKFYKACQLHRE--FYKGYSKSPHPLDYF 189
EK++ C LHRE YKG +YF
Sbjct: 236 EKWFYICSLHRETIVYKGQLAPVQVYNYF 264
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.2 bits (50), Expect = 6.3
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 11 MLTY*IYQLKSGVAGLVYQ--WFVQSMLVTLLVIYT*YDMVENLNISEKFLVDIAIYMGS 184
M Y Y G + +Q + + + +T LV++ + + IS F + + YMGS
Sbjct: 629 MKPYDCYDFMIGASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGS 688
Query: 185 H*NNPKDVDFSNNPCKI 235
P V FSN P +I
Sbjct: 689 AIWTPWRVIFSNLPRRI 705
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -2
Query: 218 SKSPHPLDYFNESPYKWQCPPEISPIYLSFPPYHIKYKSPA 96
++SPHP + S + PP ++P P+ SP+
Sbjct: 352 AQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPS 392
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 197 PKDVDFSNNPCKIPGAVDKPYR 262
P+ + F+ + CK+PG + K R
Sbjct: 73 PQPISFTLDQCKVPGYILKSLR 94
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 197 PKDVDFSNNPCKIPGAVDKPYR 262
P+ + F+ + CK+PG + K R
Sbjct: 73 PQPISFTLDQCKVPGYILKSLR 94
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -2
Query: 281 QEEIEKFYKACQLHREFYKGYSKSPHPLDYFNESPYKWQCPP 156
++E+ +F + R+F S+ HPL+ + +W+ P
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,230
Number of Sequences: 5004
Number of extensions: 37603
Number of successful extensions: 118
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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