Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15i02
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   1.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   4.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   7.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   7.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     20   7.8  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 257 YRIFQFLLGVEHLKTKYNLP 316
           +R+FQ    + H+K+ Y+ P
Sbjct: 313 FRVFQSTQYIRHIKSPYHTP 332


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 25  NLPAKERCGRAGISMVRPVD 84
           N+PA+E  G AG++   P D
Sbjct: 52  NMPAEEGEGMAGVTGEEPFD 71


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 239 REFYKGYSKSPHPLDYFNESPYKWQCPPEISPIYLSFPPYHIKY 108
           + FY GY  +   + Y N  P+     P+  PI+ +FP Y  KY
Sbjct: 289 KPFYPGYYPT---MTYSNGLPF-----PQ-RPIWSNFPIYKYKY 323


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 239 REFYKGYSKSPHPLDYFNESPYKWQCPPEISPIYLSFPPYHIKY 108
           + FY GY  +   + Y N  P+     P+  PI+ +FP Y  KY
Sbjct: 289 KPFYPGYYPT---MTYSNGLPF-----PQ-RPIWSNFPIYKYKY 323


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 146 PIYLSFPPYHIKYKSPAALP 87
           P+ L+  P H K KSP   P
Sbjct: 211 PVTLTTVPKHSKTKSPKLRP 230


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +3

Query: 159 WTLPFIWALIEIIQRMWTFRITLVKFPVQLTSLIEF 266
           W +PF    +  +   +   + L  F + LTS++ +
Sbjct: 294 WRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRY 329


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 74  VQSMLVTLLVIYT*YDMVENLNISEKFLVDIAI 172
           V  +L  +LVI   Y   +  N++  F+V +A+
Sbjct: 77  VMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAV 109


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 124 HIISSINHQQRYQHRLD 74
           HI   I+ +QRY+  +D
Sbjct: 42  HISKQISEEQRYKGMID 58


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 124 HIISSINHQQRYQHRLD 74
           HI   I+ +QRY+  +D
Sbjct: 42  HISKQISEEQRYKGMID 58


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 128 ENLNISEKFLVDIAIYMG 181
           E L  +E F VD+  Y+G
Sbjct: 74  EELRRTEAFEVDLEFYLG 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,909
Number of Sequences: 438
Number of extensions: 2567
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)