Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15h22
(683 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC029519-1|AAH29519.1| 276|Homo sapiens chromosome 6 open readi... 142 8e-34
AL136131-2|CAC19508.1| 276|Homo sapiens chromosome 6 open readi... 142 8e-34
AL136131-3|CAI19961.1| 306|Homo sapiens chromosome 6 open readi... 100 4e-21
AK055407-1|BAB70918.1| 306|Homo sapiens protein ( Homo sapiens ... 100 4e-21
AL136131-4|CAI19962.1| 132|Homo sapiens chromosome 6 open readi... 44 5e-04
>BC029519-1|AAH29519.1| 276|Homo sapiens chromosome 6 open reading
frame 206 protein.
Length = 276
Score = 142 bits (345), Expect = 8e-34
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 5/210 (2%)
Frame = -2
Query: 664 GQIYATDLDYYIAVGLTNDALTGKKYFYTTDFQFWSLLPRPKKKYKELSLITTFPFRGDP 485
G+I DYYIA GL+ D L +K Y+ + WSLLP ++ S + F GDP
Sbjct: 48 GRILGLVADYYIAQGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDP 107
Query: 484 SLK-----IKVLDESFEENHPDRCRFMKEENRLAATISNICEEVEICARGQLIKRPDGSI 320
S + ++ ++E + + +KEE RL + I I + V I RG L K P G
Sbjct: 108 SYEYEHTELQKVNEGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPT 167
Query: 319 TINPNFYGLTATEAKELKSYLHMRPAQHRWNTNLLTRPDYNYSMDFLDSIDQDIPKGCWN 140
+N F GL+ +EAK+L SY H R N LL + D + S+DF+DS++ DIPKG W+
Sbjct: 168 HVNRTFEGLSLSEAKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWS 227
Query: 139 LSLEKTGSVAYLKSLYWPGXSYXHKVKTSD 50
+ +E+ ++ L+SL WPG ++ H +T +
Sbjct: 228 IQMERGNALVVLRSLLWPGLTFYHAPRTKN 257
>AL136131-2|CAC19508.1| 276|Homo sapiens chromosome 6 open reading
frame 206 protein.
Length = 276
Score = 142 bits (345), Expect = 8e-34
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 5/210 (2%)
Frame = -2
Query: 664 GQIYATDLDYYIAVGLTNDALTGKKYFYTTDFQFWSLLPRPKKKYKELSLITTFPFRGDP 485
G+I DYYIA GL+ D L +K Y+ + WSLLP ++ S + F GDP
Sbjct: 48 GRILGLVADYYIAQGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDP 107
Query: 484 SLK-----IKVLDESFEENHPDRCRFMKEENRLAATISNICEEVEICARGQLIKRPDGSI 320
S + ++ ++E + + +KEE RL + I I + V I RG L K P G
Sbjct: 108 SYEYEHTELQKVNEGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPT 167
Query: 319 TINPNFYGLTATEAKELKSYLHMRPAQHRWNTNLLTRPDYNYSMDFLDSIDQDIPKGCWN 140
+N F GL+ +EAK+L SY H R N LL + D + S+DF+DS++ DIPKG W+
Sbjct: 168 HVNRTFEGLSLSEAKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWS 227
Query: 139 LSLEKTGSVAYLKSLYWPGXSYXHKVKTSD 50
+ +E+ ++ L+SL WPG ++ H +T +
Sbjct: 228 IQMERGNALVVLRSLLWPGLTFYHAPRTKN 257
>AL136131-3|CAI19961.1| 306|Homo sapiens chromosome 6 open reading
frame 206 protein.
Length = 306
Score = 100 bits (240), Expect = 4e-21
Identities = 63/172 (36%), Positives = 86/172 (50%)
Frame = -2
Query: 664 GQIYATDLDYYIAVGLTNDALTGKKYFYTTDFQFWSLLPRPKKKYKELSLITTFPFRGDP 485
G+I DYYIA GL+ D L +K Y+ + WSLLP ++ S + F GDP
Sbjct: 48 GRILGLVADYYIAQGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDP 107
Query: 484 SLKIKVLDESFEENHPDRCRFMKEENRLAATISNICEEVEICARGQLIKRPDGSITINPN 305
S +E H + + + E I I + V I RG L K P G +N
Sbjct: 108 S---------YEYEHTELQKVNEGEKVFEEEIV-IDKAVAIIPRGALFKTPFGPTHVNRT 157
Query: 304 FYGLTATEAKELKSYLHMRPAQHRWNTNLLTRPDYNYSMDFLDSIDQDIPKG 149
F GL+ +EAK+L SY H R N LL + D + S+DF+DS++ DIPKG
Sbjct: 158 FEGLSLSEAKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKG 209
>AK055407-1|BAB70918.1| 306|Homo sapiens protein ( Homo sapiens
cDNA FLJ30845 fis, clone FEBRA2002727. ).
Length = 306
Score = 100 bits (240), Expect = 4e-21
Identities = 63/172 (36%), Positives = 86/172 (50%)
Frame = -2
Query: 664 GQIYATDLDYYIAVGLTNDALTGKKYFYTTDFQFWSLLPRPKKKYKELSLITTFPFRGDP 485
G+I DYYIA GL+ D L +K Y+ + WSLLP ++ S + F GDP
Sbjct: 48 GRILGLVADYYIAQGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDP 107
Query: 484 SLKIKVLDESFEENHPDRCRFMKEENRLAATISNICEEVEICARGQLIKRPDGSITINPN 305
S +E H + + + E I I + V I RG L K P G +N
Sbjct: 108 S---------YEYEHTELQKVNEGEKVFEEEIV-IDKAVAIIPRGALFKTPFGPTHVNRT 157
Query: 304 FYGLTATEAKELKSYLHMRPAQHRWNTNLLTRPDYNYSMDFLDSIDQDIPKG 149
F GL+ +EAK+L SY H R N LL + D + S+DF+DS++ DIPKG
Sbjct: 158 FEGLSLSEAKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKG 209
>AL136131-4|CAI19962.1| 132|Homo sapiens chromosome 6 open reading
frame 206 protein.
Length = 132
Score = 44.0 bits (99), Expect = 5e-04
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Frame = -2
Query: 562 WSLLPRPKKKYKELSLITTFPFRGDPS-----LKIKVLDESFEENHPDRCRFMKEENRLA 398
WSLLP ++ S + F GDPS +++ ++E + + +KEE RL
Sbjct: 6 WSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVNEGEKVFEEEIVVQIKEETRLV 65
Query: 397 ATISNICEEVEICARGQLIKRPDGSITINPNFYG 296
+ I I + V I RG L K P G +N F G
Sbjct: 66 SVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEG 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,880,963
Number of Sequences: 237096
Number of extensions: 2004863
Number of successful extensions: 3342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3338
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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