Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15h22
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        25   0.67 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   2.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.3  

>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 356 CAYFNFFTNITDCSGQAIFFFHE 424
           C Y + +TN  D S   +F+ HE
Sbjct: 4   CLYLDVYTNSLDQSKPVMFYVHE 26


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 368 NFFTNITDCSGQAIFFFHEATPVR 439
           N F +I DC  ++   FHE   +R
Sbjct: 26  NIFQDIADCVDRSNMTFHELKKLR 49


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 205 DYNYSMDFLDSIDQ 164
           DYNY+M++L   DQ
Sbjct: 56  DYNYTMNYLLDTDQ 69


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 327 PSGRLISCPLAHISTSSQILLIVA 398
           P G L SC   +++ +++I + VA
Sbjct: 190 PEGFLTSCSFDYLTDTNEIRIFVA 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,146
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)