Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15h08
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   7.4  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    20   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 165 QVNLINFFGNLDFM 124
           Q NLI F GNL F+
Sbjct: 874 QNNLIGFIGNLTFL 887


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 265 ILNML*NPTYSS*KELMCFLSSIKNI*CLSG 173
           +LN L +P YS+ +  +  LSS+ +  CL G
Sbjct: 169 VLNNLHDPEYSARENELRALSSLFSKGCLVG 199


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 265 ILNML*NPTYSS*KELMCFLSSIKNI*CLSG 173
           +LN L +P YS+ +  +  LSS+ +  CL G
Sbjct: 169 VLNNLHDPEYSARENELRALSSLFSKGCLVG 199


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 265 ILNML*NPTYSS*KELMCFLSSIKNI*CLSG 173
           +LN L +P YS+ +  +  LSS+ +  CL G
Sbjct: 169 VLNNLHDPEYSARENELRALSSLFSKGCLVG 199


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 150 LLNSPVPLPLRHQMFLMEDKKHINS 224
           L+N  V +P  HQ   ME   ++ S
Sbjct: 702 LMNRAVSVPQSHQPGAMEQVSYLTS 726


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 305 MHTFGVPFGVCTSTI 349
           +HTFG  FG+  S +
Sbjct: 176 VHTFGAYFGLAISFV 190


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 181 DIKCF*WKIKSTLILFKNYRLDF 249
           D++C+   I   L  FKN   DF
Sbjct: 64  DLQCYTTCIMKLLRTFKNGNFDF 86


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 177 LRHQMFLMEDKKHINS 224
           L+    ++ED KHIN+
Sbjct: 211 LKELRIILEDIKHINT 226


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 175 GNGTGEFNKFFWK 137
           G G G+ NK +WK
Sbjct: 14  GLGAGQNNKGWWK 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,972
Number of Sequences: 438
Number of extensions: 1868
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)