Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15h02
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   251   1e-67
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    29   0.88 
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   1.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.7  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   4.7  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    27   4.7  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   6.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.2  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.2  

>SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 704

 Score =  251 bits (614), Expect = 1e-67
 Identities = 127/257 (49%), Positives = 176/257 (68%), Gaps = 1/257 (0%)
 Frame = -2

Query: 858  SLKEYVSRMKENQKHIYYITGENRDQVANSSFVERVKKRGYEVVYMTEPIDEYVVQQMRE 679
            SL++Y+++M E+QK+IY+ITGE++  V NS F+E  + + ++V++M +PIDEY V Q++E
Sbjct: 451  SLEDYITKMPEHQKNIYFITGESKQAVENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKE 510

Query: 678  YDGKTLVSVTXXXXXXXXXXXXXXXXXXXXXXXEGLCKVMKNILDNKVEKVVVSNRLVES 499
            ++GK LV++T                       E   K +K IL +KVEKVVVSN++V S
Sbjct: 511  FEGKKLVNITKDGLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVGS 570

Query: 498  PCCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEAD-K 322
            PC + T QYGWSANMERIMKAQALRDTS   YM+++K  EINP   I+  L++K E +  
Sbjct: 571  PCLLTTGQYGWSANMERIMKAQALRDTSMSAYMSSRKTFEINPKSPIIAELKKKVEENGA 630

Query: 321  NDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDV 142
             D++VKDL  +LYETALLSSGFTLD+P  +A RI R+I LGL IDE+E   +EE ++  V
Sbjct: 631  EDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLISLGLSIDEEEEAPIEEISTESV 690

Query: 141  PPLEGDADDASRMEEVD 91
               E +A+  S+MEEVD
Sbjct: 691  -AAENNAE--SKMEEVD 704


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 615 LPHLQEVLILPL*PIQGSCHHTPSSVVLHIHQWAQSCRLLHSHVSSLSPQMRSSPPGLCF 794
           +P ++++L++P      +  H P +++L       S  LL     ++S    S PP LCF
Sbjct: 375 IPPVRDMLVIPSSSPHYNGSHNPKNLLLLSED--NSLSLLDISTGNISNMSLSIPPSLCF 432

Query: 795 L 797
           L
Sbjct: 433 L 433


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 174 IQVEEPASGDVPPLEGDADDASRMEEVD 91
           IQ + P   D PP++ DAD+    EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 459 NMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 337
           N  R M +  L    +  ++A KK LE+N    IV TLRQ+
Sbjct: 117 NTIRSMSSVVLASALSNNFIAQKKALEMNIMPKIVNTLRQE 157


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
 Frame = +1

Query: 442 HDTFH--VGRPSILSSNNT-----ARRLHKSVRDNNFLNFVVQDVLHH 564
           H+TF   VG   +++S+NT       RL K + +  F NF+ +++LH+
Sbjct: 197 HETFSHPVGCLIVITSHNTNPMATVMRLFKEINNAPFPNFISKEILHY 244


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 699  HIHQWAQSCRLLHSHVSSLSPQMRSSP 779
            H H W   CRL  + ++ ++ +++ SP
Sbjct: 1488 HAHSWIGFCRLARTRITGVNRKVKGSP 1514


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/82 (19%), Positives = 39/82 (47%)
 Frame = -2

Query: 342 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 163
           Q AE +   +   ++ +L+     + + + +D   ++   + ++      I ED+  +VE
Sbjct: 22  QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81

Query: 162 EPASGDVPPLEGDADDASRMEE 97
           +P SG+   L  + D+  + E+
Sbjct: 82  KPVSGNQFSLLSEEDEVDKKEK 103


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 130 LQWRHISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 240
           L+W  I RS   N+N    ++   Q  HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 807 SRYVSDSPSSWIHTLSESKASSPR 878
           +RY +D  S ++HTL+ + A+ PR
Sbjct: 396 TRYRNDKDSGFVHTLNGTAAAIPR 419


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 354  ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 184
            E+ R+K E+DKN ++ K +     E+     G + D   V   R+YR    G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 440 RLRLYVTHPQWDTWLRRSIWKSIL 369
           +L +Y +  QW+ W  R  WKSI+
Sbjct: 8   KLHIYASPEQWEKWSPR--WKSIV 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,975
Number of Sequences: 5004
Number of extensions: 69600
Number of successful extensions: 229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)