Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15g24
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   5.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = -1

Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
           C +C    +   +    C+ C  F +    KD  Y C
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 146


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = -1

Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
           C +C    +   +    C+ C  F +    KD  Y C
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 146


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 94  NKRN-EESRYCLSPKGHKPEIKMFSIN 17
           +KRN EES  C   K + PE  ++ ++
Sbjct: 183 SKRNSEESAICAMLKENMPEFPLYQLS 209


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 470 KLKFICVMQFILNV 429
           KLK I ++QFIL+V
Sbjct: 48  KLKIIEILQFILDV 61


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 470 KLKFICVMQFILNV 429
           KLK I ++QFIL+V
Sbjct: 16  KLKIIEILQFILDV 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,336
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)