Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15g22
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.2  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   7.4  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   7.4  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   7.4  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   7.4  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   7.4  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   7.4  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   7.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 453 FTSPQCGSNT 424
           FTSP CGS T
Sbjct: 43  FTSPACGSET 52


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 9   SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 49


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 9   SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 49


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 9   SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 49


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 9   SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 49


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 9   SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 49


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 9   SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 49


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 9   SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 49


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 258 SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 298


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 258 SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 298


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 258 SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 298


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 258 SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 298


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 258 SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 298


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 258 SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 298


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  AQPFPRDIRSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           ++ + +  R  +Q H++    +     RRR S  R  + K+
Sbjct: 258 SREYKKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 298


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 198 THTTNKLCL 224
           THTTN  CL
Sbjct: 38  THTTNAFCL 46


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 198 THTTNKLCL 224
           THTTN  CL
Sbjct: 37  THTTNAFCL 45


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 37  RSRNQAHSIASCXIASHRPRRRVSEKRTNKTKT 135
           R  +Q H++    +     RRR S  R  + K+
Sbjct: 265 RRYDQLHNVEEKHLRERTSRRRYSRSREREQKS 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,061
Number of Sequences: 438
Number of extensions: 1685
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)