Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15g14
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   2.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   2.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   8.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 122 ITMSII*VDILHEHGVNDS 66
           I + ++  DILHEH V+D+
Sbjct: 403 IKVFVVNKDILHEHNVDDN 421


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 319 ETVFRCYDTTMTVDISPLNDNNMITQHR 402
           E  FRC    +T  ++ L+  N + QH+
Sbjct: 157 ERAFRCLGNNLTAFLTTLDGVNDVVQHQ 184


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 146 VLYAFVCSVINLFIIFLSINKNFRSI 223
           +L   VC VI + ++FL+   +FR I
Sbjct: 222 ILKKTVCFVIPIMLLFLAFFVSFRKI 247


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 437 HNDHFFFQIPHSQKRRNQHNLQ 502
           H +H   Q  HS K  NQ+N Q
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQ 445


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 476 KRRNQHNLQLHYGHNR 523
           ++R+QH  Q+ YGH +
Sbjct: 793 QQRHQHAAQMIYGHQQ 808


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 171 TLHTNAYKTKNQIRCYDYDVHNLSRY 94
           T+H N     N    Y+Y+ +N + Y
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNY 114


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -1

Query: 680 VHEMCVCMKIIKVH 639
           +H+ C+C++ I  H
Sbjct: 484 IHKSCICVRFIAEH 497


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -1

Query: 680 VHEMCVCMKIIKVH 639
           +H+ C+C++ I  H
Sbjct: 484 IHKSCICVRFIAEH 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,554
Number of Sequences: 438
Number of extensions: 4663
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)