Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15g04
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.6  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   6.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.1  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 4   TEINISHRACCLGSRNVLGM*MP*XFQ 84
           + INIS    C+G +NV G  +P  F+
Sbjct: 238 SNINISQVIACVGQQNVEGKRIPFGFR 264


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 35/213 (16%), Positives = 85/213 (39%), Gaps = 5/213 (2%)
 Frame = -1

Query: 725 VTATLEDIRDLKKTSEIENDINEVKKNIDNVPFVDLNI-----ESKNITNVVNIAQNNVH 561
           +  T E  + + +  EI+N + ++ K  ++   + +NI     ESK      N  ++  H
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTH 222

Query: 560 YHHGERTNIKREFDIKTWCTELEQGYKNLELWNLWISNACEAVLQIKKIEDSIRLCPIRS 381
                 ++  RE   ++   +  + YK  +     + N  E +L+ +           R 
Sbjct: 223 GFQHTSSHYSRE---RSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSRERE 279

Query: 380 QQYWRNLKANIDKDATMWLKFNKQIQNKAYLMSNNNKKRVLKTNCKCKNSKLKSYKYFI* 201
           Q+ ++N     +     + + +K+          + + +++ +     N K  +Y  +  
Sbjct: 280 QKSYKN-----ENSYRKYRETSKERSRDRKERERSKEPKIISS--LSNNYKYSNYNNYNN 332

Query: 200 HSRRLHGLFI*KNNYKSFKVNVDLIVVIFSDYC 102
           ++   +  +  K  YK++ +N++ I V    YC
Sbjct: 333 YNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYC 365


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = -1

Query: 746 SLDPTSNVTATLEDI--RDLKKTSEIENDINEVKKNIDN---VPFVDLNIESKNITN 591
           +LD   +   T++ +  +++    +I +DINE K N+D+   + F++  ++  N+ +
Sbjct: 18  TLDELKSGLHTVQSVCMKEIGTAQQIIDDINEGKINMDDENVLLFIECTMKKFNVVD 74


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 327 PHSCIFVNICFEISPILLTSYRAESYRIFYFFNL 428
           P  C+F N  F I   L + Y      +F ++N+
Sbjct: 333 PDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNI 366


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 490 CSNSVHHVLISNSLFIFVRS 549
           CSN +  +     L++FVRS
Sbjct: 935 CSNYLREISDGEPLYVFVRS 954


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,788
Number of Sequences: 438
Number of extensions: 3941
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)