Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f18
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0372 + 2668597-2668671,2669021-2669126,2669279-2669334,266... 35 0.083
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 33 0.33
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 31 0.77
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467... 29 3.1
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 29 3.1
10_01_0045 + 611166-612308 29 4.1
03_05_1022 - 29756127-29756198,29756335-29756421,29756783-297569... 29 4.1
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 29 4.1
01_06_0757 + 31737119-31737356,31738683-31738741,31738786-317389... 29 4.1
10_08_1022 + 22337332-22339398 29 5.4
06_01_0683 - 5006075-5006113,5006303-5006677 29 5.4
02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460 29 5.4
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272... 28 7.2
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905... 28 7.2
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984... 28 7.2
01_06_1700 + 39282713-39282833,39283184-39283305,39283650-392838... 28 7.2
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 28 7.2
10_08_1012 - 22237330-22237740,22237980-22238180 28 9.5
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 9.5
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 28 9.5
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047 28 9.5
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 28 9.5
01_07_0251 + 42289617-42291241,42291424-42292156 28 9.5
>02_01_0372 +
2668597-2668671,2669021-2669126,2669279-2669334,
2669830-2669907,2669993-2670066,2670147-2670280,
2670377-2670472,2670703-2670854
Length = 256
Score = 34.7 bits (76), Expect = 0.083
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = -2
Query: 561 LEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNE---IDNLHAIDYDVRLKYREIM 391
+EQ++ D H RKL + E LR+ K K E Q + + ++ + V +K+R+
Sbjct: 188 VEQEEKNDMH-----RKLQNTENELRIMKMKQAEQQRDSISVQHVETLKQKV-MKFRKEN 241
Query: 390 ESLKKDLMYNEKEC 349
ESLK+ L +E +C
Sbjct: 242 ESLKRRLAISELDC 255
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 32.7 bits (71), Expect = 0.33
Identities = 29/129 (22%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Frame = -2
Query: 654 RSYKVEPECQSCQAQVVHRLCPHHNVVQGFRLEQKDSLDEHLDVLTRKL-ADKEGRLR-- 484
R +++E E +S + ++ H + +R ++ D + LD + +L +++ R R
Sbjct: 220 RIHELEAESRSAKKKLDHLVRNLAEEKASWRSKENDKVRNILDAVKEELNRERKNRQRAE 279
Query: 483 LSKSKIRETQNEIDNL---HAIDYDVRLKYREIMESLKKDLMYNEKECKRLQEQIEWVSR 313
+ SK+ +E+ + + DY+ K RE+ME + +L KE + ++E +
Sbjct: 280 IMNSKLVSELSELKSAAKRYLQDYEKERKARELMEEVCDEL---AKEIAEDKAEVEALKS 336
Query: 312 RRAELKDEV 286
+++DEV
Sbjct: 337 ESMKMRDEV 345
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 560 WSRRTASMSTWMYSPENLLTRKVASAFPSPR 468
WS T +TW E+ L +K+AS FPSPR
Sbjct: 224 WSHYTMDEATW--EKEDDLQKKLASVFPSPR 252
>08_01_0538 -
4670159-4670251,4670332-4670393,4670476-4670599,
4670797-4670859,4671483-4671533,4671627-4671691,
4671797-4671935,4672332-4672388,4672729-4672827,
4673266-4673337,4673426-4673494,4673617-4673762,
4673881-4674157
Length = 438
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Frame = +3
Query: 531 GAHRGCPSAPAGTP-----ARRCDEGRA-GAPLELGTIDILVRPYRTATAISQPAVAEQT 692
G+H CPS P P RR D A + +E I+ L+ P + A A + +
Sbjct: 14 GSHYPCPSCPTAIPIRDRRRRRADRAAAEPSRIESNRIETLLLPIQAAAAAAIAGGMNKR 73
Query: 693 PRRGQRQSMGTSXXATY 743
PR S ++ Y
Sbjct: 74 PRDEPSSSFASAPKRQY 90
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/117 (19%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = -2
Query: 609 VVHRLCPHHNVVQGFRLEQKDSLD-EHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLH 433
+V C + V + E+ D+L+ + + + A ++ + + SK+++ E + E+D+L
Sbjct: 396 LVDEACANVRVQLDSQPEEIDNLERKRIQLEVEHHALEKEKDKASKARLVEVKKELDDLR 455
Query: 432 AIDYDVRLKYREIMESLKKDLMYNEKECKRLQEQIEWVSRRRAELKDEVRLGQRLYG 262
+ +KYR+ +K+ + ++ K+ +E++++ + D R+ YG
Sbjct: 456 DKLQPLTMKYRK-----EKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKYG 507
>10_01_0045 + 611166-612308
Length = 380
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 540 RGCPSAPAGTPARRCDEGRAGAPLELGTIDILVR 641
RG PSAP+ TP R D+ A +P + + + R
Sbjct: 132 RGLPSAPSVTPVRLDDQNNAVSPFTMAFMQLADR 165
>03_05_1022 -
29756127-29756198,29756335-29756421,29756783-29756968,
29757088-29757188,29757379-29757484,29757564-29757638,
29757772-29757903,29771476-29771655,29772032-29772234,
29773296-29773602
Length = 482
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/84 (21%), Positives = 36/84 (42%)
Frame = -2
Query: 585 HNVVQGFRLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLK 406
H ++ LE L ++ + +G +RL ++ +DN + YD R+K
Sbjct: 91 HEILGAINLEYTSELISEMERNGGEYVTMDGLVRLILAEAHGFCLGVDNAVRLAYDARVK 150
Query: 405 YREIMESLKKDLMYNEKECKRLQE 334
+ + L +++N +RL E
Sbjct: 151 FPDRRLWLTNQIIHNPTVSERLDE 174
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 525 HPGAHRGCPSAPAGTPARRCDEGRAGAPLELGTIDILVRPYRTATAISQ 671
H G G S DE RA PL++G + ++ +P A AI +
Sbjct: 560 HEGGEVGPSSVVVSRAVATLDESRAAGPLKIGDV-VIEKPELAAAAIEE 607
>01_06_0757 +
31737119-31737356,31738683-31738741,31738786-31738940,
31740311-31740386,31740521-31740655,31741273-31741309,
31741817-31741839
Length = 240
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/82 (31%), Positives = 32/82 (39%)
Frame = -1
Query: 352 VQEAAGANRMGVPEAGRVER*GATRSETVRGSGRGTGQ*FI*TAARSRPRLQDNREATRP 173
V+ A A R EA + AT + RG G G G +A R R Q REA +
Sbjct: 21 VRLKARARRWRRREAETLGDADATAAAAARGEGGGGG------SASGRQRRQRKREAEQG 74
Query: 172 ALSHRAASQKGAASTATEPGCV 107
S R G S P C+
Sbjct: 75 GGSERGLGLSGRRSRVDLPACL 96
>10_08_1022 + 22337332-22339398
Length = 688
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 653 RHCHLTASSSRTNATPRATAINGYIVXSDLPSYHPTT 763
R T+ +S TN P ATA G + S P+ P+T
Sbjct: 423 RSMEATSRASNTNNHPAATANEGMLSFSSAPTTRPST 459
>06_01_0683 - 5006075-5006113,5006303-5006677
Length = 137
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 226 TAARSRPRLQDNREATRPALSHRAASQKGAASTATEPGCVV 104
T R R L + EA+ PAL A + A+TA EP VV
Sbjct: 19 TNGRRRLHLAAHAEASSPALCRPAHRRLPLAATAAEPATVV 59
>02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460
Length = 499
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 469 LGLGKAEATFLVSKFS--GEYIQVLIEAVLLLQPEPLHDVVMRAEPVHHLS 615
LG G+ T+L ++ S EY I LL PE + DV + +HHL+
Sbjct: 34 LGQGQFGTTYLCTQVSTGAEYACKSIAKRKLLSPEDVEDVRREIQIMHHLA 84
>08_02_0154 -
13324384-13325351,13326306-13326502,13326695-13327274,
13328324-13328446,13328803-13329130
Length = 731
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 186 KPHVQ-RSVTELRHRKEPHLPRPNPAASLVIKT---SPPQTSEAIVTHFDS*QKNVTNFY 19
KP ++ + + +L +K P P+P KT SPP+T E T D ++ +F+
Sbjct: 359 KPPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPPETIENPQTELDGEIEDGISFH 418
Query: 18 FY 13
F+
Sbjct: 419 FF 420
>08_02_0151 -
13287964-13288661,13289616-13289812,13290005-13290523,
13290912-13291114
Length = 538
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 186 KPHVQ-RSVTELRHRKEPHLPRPNPAASLVIKT---SPPQTSEAIVTHFDS*QKNVTNFY 19
KP ++ + + +L +K P P+P KT SPP+T E T D ++ +F+
Sbjct: 256 KPPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPPETIENPQTELDGEIEDGISFH 315
Query: 18 FY 13
F+
Sbjct: 316 FF 317
>08_02_0146 -
13195691-13196658,13197613-13197809,13198002-13198479,
13199660-13199782,13200139-13200466
Length = 697
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 186 KPHVQ-RSVTELRHRKEPHLPRPNPAASLVIKT---SPPQTSEAIVTHFDS*QKNVTNFY 19
KP ++ + + +L +K P P+P KT SPP+T E T D ++ +F+
Sbjct: 325 KPPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPPETIENPQTELDGEIEDGISFH 384
Query: 18 FY 13
F+
Sbjct: 385 FF 386
>01_06_1700 +
39282713-39282833,39283184-39283305,39283650-39283813,
39284762-39284780,39284927-39285106,39285355-39285432,
39285578-39285658,39286010-39286102,39286321-39286401,
39286499-39286661,39286778-39286898,39287183-39287255,
39287528-39287635,39287922-39288019,39288106-39288151,
39288514-39288610,39288940-39289013,39289092-39289196,
39289284-39289364,39289446-39289556
Length = 671
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = -2
Query: 618 QAQVVHRLCPHHNVVQGFRLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQN-EID 442
QA V+ R+ + V+ E + LD H + + K + +K+ +++ E++
Sbjct: 103 QACVLPRMVSPSDDVRRASAEAEKRLDSHFQQCSYRSKLKVREFERNGAKLTQSKKTEME 162
Query: 441 NLHAIDYDVRLKYREIMESLKKDLMYNEKE 352
L + D+ LKY + + K L+ NE++
Sbjct: 163 KLKSHIDDLSLKYIQSLNDSTKFLLLNEED 192
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -2
Query: 528 DVLTRKLADKEGRLRLSKS--KIRETQNE-IDNLHAIDYDVRLKYREIMESLKKDLMYNE 358
D+ T+K A + RL + K+ + NE + NLH D L+ + E+LK +L
Sbjct: 340 DLETKKNATELSIARLEEDNRKLHDAYNEEMRNLHRRARDYALRVFQDNENLKLELDSRR 399
Query: 357 KECKRLQEQIEWVSRRRA 304
+E +Q+E ++ A
Sbjct: 400 RELNSRAKQLEKITAENA 417
>10_08_1012 - 22237330-22237740,22237980-22238180
Length = 203
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 603 HRLCPHHNVVQGFRLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRE 460
+ L PHH G R++ +DE L KL D E + R ++ E
Sbjct: 89 NNLQPHHEYAAGDRMDHPYEIDEDKTTL-EKLVDGEDKYRADDLQVDE 135
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 408 KYREIMESLKKDLMYNEKECKRLQEQIE 325
KY E LKKDL + +E RL+EQ++
Sbjct: 1348 KYLEASTKLKKDLSFYCREVLRLKEQLK 1375
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -2
Query: 477 KSKIRETQNEIDNLHAIDYDVRLKYREIMESLKKDLMYNEKEC 349
++ I+E E+D D+D R+ Y E +E++ DL++ EC
Sbjct: 500 EATIKEIIAEVDT----DHDNRIDYIEYLENIGGDLVFKYAEC 538
>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
Length = 368
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = -1
Query: 286 ATRSETVRGSGRGTGQ*FI*TAARSRPRLQDNREATRPALSHRAASQKGAASTATEPGCV 107
AT G G G G+ AAR RPR +D L+ A+ +G ASTA CV
Sbjct: 240 ATAVRGAHGGGGGGGRGA--RAARRRPRRED--------LAVTVAAARGRASTAASLACV 289
Query: 106 VGD 98
G+
Sbjct: 290 HGE 292
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -2
Query: 582 NVVQGFRLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKY 403
++++ + +Q ++L D + RK+ DKE + + E +++I L A++ +
Sbjct: 173 SILEKVQAKQFEALASVEDKILRKIRDKEAEVENINKRNSELEDQIKQL-AVEVGAWQQR 231
Query: 402 REIMESLKKDLMYN-EKEC 349
+ ES+ L YN E+ C
Sbjct: 232 AKYNESMINALKYNLEQVC 250
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 180 HVQRSVTELRHRK--EPHLPRPNPAASLVIKTS 88
H+ R+ T LRH H+ R +PAASL ++ +
Sbjct: 16 HLLRACTSLRHAAAVHAHIARAHPAASLFLRNT 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,356,884
Number of Sequences: 37544
Number of extensions: 516936
Number of successful extensions: 1970
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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