Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f16
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    31   0.82 
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804...    31   1.4  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    29   4.4  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    29   4.4  
02_01_0475 + 3422629-3422695,3422960-3423216                           29   5.8  

>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
            24030162-24030455,24031490-24031717,24031827-24032006,
            24032079-24032238,24032591-24032617,24033426-24033613,
            24034269-24034532,24035123-24035218,24035311-24035399,
            24035473-24035620,24035842-24036051,24036141-24036440,
            24037906-24038248,24038747-24038952,24039071-24039273,
            24040021-24040117,24040148-24040222,24040328-24040602,
            24041116-24041256,24041469-24042339,24042481-24042520,
            24042605-24043050
          Length = 1808

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 23/88 (26%), Positives = 39/88 (44%)
 Frame = -1

Query: 585  RVPKTTKVERMGKYDRIQELCSCENTPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYD 406
            R  K  K E   +  R +E    E+T    GD+ +   PK+ H ++  T + K  H+  D
Sbjct: 951  RPKKDDKAEAKAEDIRPKEGDEAEDTRPKEGDEAEDTRPKEDHEAEDST-HPKEDHEAED 1009

Query: 405  NTCDKRDRKILSVTPTNCPVPVAMEKIL 322
            +T  K D +          + + +EKI+
Sbjct: 1010 STHPKEDHEAEGDDEDQMKLQMEVEKII 1037


>03_05_1111 -
           30479793-30479823,30479887-30479978,30480261-30480410,
           30482229-30482354,30482563-30482628,30483134-30483214,
           30483310-30483422,30483553-30483721,30484253-30484330,
           30485489-30485752,30486239-30486379,30486548-30486759,
           30486819-30486940,30487281-30487398,30487925-30487997
          Length = 611

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 528 LCSCENTPYNTGDQIQFQLPKDFHNSDTYT-SNLKYTHKGYDNTCDKRDRKILSVTPTN 355
           +CS   T ++  +    +L + +HNS  +  ++L + H  Y N  +K+    L V PTN
Sbjct: 31  ICSISGT-HSLVNHPNLRLQRGYHNSGKFDLTDLTHPHIWYPNAREKKRNVFLHVGPTN 88


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -1

Query: 681  RSYQPIPYSHYQNEVPKYDEIFTKINANELKIRVPKTTK--VERMGKYDRIQELCSCENT 508
            R + P P    Q   PK +E      AN+L    P   K  V+ +G  DR+Q   S E T
Sbjct: 3760 REFTPYPSVEDQGSAPKAEEPLPPTTANQLGSGSPWKFKYQVDLVGMMDRVQP--SSEAT 3817

Query: 507  P 505
            P
Sbjct: 3818 P 3818


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 396 RKYCRSLYECILNLKCKYQNYGNLSVTGIVSDLLYCKVY 512
           R + +   EC  N  CK   Y NLS  G ++D   C V+
Sbjct: 353 RSFDQCAAECSSNCSCKAYAYANLSSGGTMADPSRCLVW 391


>02_01_0475 + 3422629-3422695,3422960-3423216
          Length = 107

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 140 RKQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
           +K+  +KK K K++  ++KK   K K+K N  +S  TN
Sbjct: 43  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKLSSAVTN 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,528,793
Number of Sequences: 37544
Number of extensions: 324236
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)