Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f16
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U80029-4|AAB37584.1|  125|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6b protein.
          Length = 843

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = -1

Query: 795 MKVGLTKKKFTLCASQSFISLKEI--QRCPSPTSSILSSKRSYQPIPYSHYQNEVPKYDE 622
           MK    K+ F     +S + L+    Q  PSP  ++ +     +P P  +   E P++ +
Sbjct: 444 MKHTKIKRHFVAMGKRSMVELQLTLKQHIPSPVGTVAAESSQKEPSPSVYVDTETPEHQQ 503

Query: 621 IFTKINANELKIRV-PKTTKVE 559
           +    N+  L ++V P+T+ ++
Sbjct: 504 L---QNSGGLLMKVAPQTSSID 522


>AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6a protein.
          Length = 841

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = -1

Query: 795 MKVGLTKKKFTLCASQSFISLKEI--QRCPSPTSSILSSKRSYQPIPYSHYQNEVPKYDE 622
           MK    K+ F     +S + L+    Q  PSP  ++ +     +P P  +   E P++ +
Sbjct: 444 MKHTKIKRHFVAMGKRSMVELQLTLKQHIPSPVGTVAAESSQKEPSPSVYVDTETPEHQQ 503

Query: 621 IFTKINANELKIRV-PKTTKVE 559
           +    N+  L ++V P+T+ ++
Sbjct: 504 L---QNSGGLLMKVAPQTSSID 522


>Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical
           protein C34E11.1 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 531 ELCSCENTPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVT 364
           EL   E    N+ D+ +++   D ++     S+ K ++ GYDN  DK D    SVT
Sbjct: 163 ELLQAERQKANSDDKSKYR-GFDQYDMKMSGSSFKSSNSGYDNKWDKEDSFSSSVT 217


>U80029-4|AAB37584.1|  125|Caenorhabditis elegans Hypothetical
           protein T20D4.17 protein.
          Length = 125

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 393 YRKYCRSLYECILNLKCKYQNYGNLSVTGIVSDLLYCKVYFH 518
           ++  C SL +C  NL C  QN    S    V       VY H
Sbjct: 64  FKTSCDSLQKCFANLTCSLQNEKGESALKTVEKYCDALVYLH 105


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 651 YQNEVPKYDEIFTKINANELKIRVPKTTKVERMGKYDRIQELCSCEN 511
           Y N++ K + + + +N   L +   + TK+E + K  +++ L    N
Sbjct: 84  YDNQITKVENLDSLVNLESLDLSFNRITKIENLEKLTKLKTLFFVHN 130


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 714 PSPTSSILSSKRSYQPIPYSHYQN 643
           P PT +  +S  ++QP+P S YQ+
Sbjct: 703 PPPTQASSTSHNNHQPVPQSQYQS 726


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,506
Number of Sequences: 27780
Number of extensions: 338610
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)