Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f12
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 205 7e-54
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 122 8e-29
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 109 4e-25
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 109 4e-25
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 107 1e-24
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 103 2e-23
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 97 3e-21
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 67 2e-12
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 28 1.4
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 28 1.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.2
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 26 7.4
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 26 7.4
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 9.8
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 205 bits (500), Expect = 7e-54
Identities = 94/218 (43%), Positives = 142/218 (65%), Gaps = 1/218 (0%)
Frame = -2
Query: 819 RRLAKTVNATVLPRLTTPTTQELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGST 640
RRL + V AT L R+ P +E+G D V E+G RV VF+ +R +TIV+RG+T
Sbjct: 322 RRLCRVVGATPLARMGVPMPEEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGAT 381
Query: 639 DNYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKF 460
Y+DD+ERAIDDGVN K + +D R + GAGA++++L +L+ + PG+ Q+A++++
Sbjct: 382 KTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQY 441
Query: 459 AVALESIPHALADNSGANATEVVNKIYKA-HKEGQKNAGFDIDSENNGVCDAKEKGIIDS 283
A E +P +++N+G + T+V++K+Y A HKE ++ G D++ EN+G DAKE GI D
Sbjct: 442 GEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDV 501
Query: 282 YLLKFWGIKYAVGAATTILKVDQIIMAKRAGGPKPRAP 169
L K I+ A T+L VDQ++M+K AGGPKP P
Sbjct: 502 LLAKKSAIRLATETVLTVLNVDQVVMSKPAGGPKPPGP 539
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 122 bits (293), Expect = 8e-29
Identities = 69/219 (31%), Positives = 121/219 (55%)
Frame = -2
Query: 816 RLAKTVNATVLPRLTTPTTQELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTD 637
R+ + V ++ + + LG CD ++G R +F+ +++ T+++RG D
Sbjct: 326 RVVQAVGGSIQSTCSNIEEKHLGTCDTFEERQIGGDRFNLFE-GCPKAKTCTLILRGGAD 384
Query: 636 NYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFA 457
++ ++ER++ D + K ++ V G GA E+EL++ L +++ T+ G +Q + FA
Sbjct: 385 QFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFA 444
Query: 456 VALESIPHALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYL 277
+LE IP L DN+G ++T ++NK+ H +G+ AG D+DSE GV + EK + +
Sbjct: 445 RSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSE--GVANNFEKFVWEPST 502
Query: 276 LKFWGIKYAVGAATTILKVDQIIMAKRAGGPKPRAPAGS 160
+K I A AAT IL VD+ I K +P+AP G+
Sbjct: 503 VKSNAILSATEAATLILSVDETI--KNEPSQQPQAPQGA 539
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 109 bits (263), Expect = 4e-25
Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 1/205 (0%)
Frame = -2
Query: 813 LAKTVNATVLPRLTTPTTQELGYCDAVHVDEVGDTRVVVFKMES-SESRISTIVIRGSTD 637
+A N ++PR ++ +LG V G TR + +E + SR T+ +RGS
Sbjct: 335 IAIATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNK 394
Query: 636 NYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFA 457
+D+ +RA+ D + + + RD R V G GA EI + + + A+ +PG++QY++ FA
Sbjct: 395 MIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFA 454
Query: 456 VALESIPHALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYL 277
AL++IP ALA+NSG ++ E + + KA + A ID G D +++ +ID +
Sbjct: 455 DALDTIPLALAENSGLSSIEALTAV-KARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLI 513
Query: 276 LKFWGIKYAVGAATTILKVDQIIMA 202
K + A +LKV+ II+A
Sbjct: 514 GKKQQLLLATQLCRMVLKVNDIIVA 538
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 109 bits (263), Expect = 4e-25
Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 1/208 (0%)
Frame = -2
Query: 816 RLAKTVNATVLPRLTTPTTQELGY-CDAVHVDEVGDTRVVVFKMESSESRISTIVIRGST 640
R+A+ A ++ RL +++G C ++D++GD F + TI++RG +
Sbjct: 320 RIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGD-EYYTFLTGCKNPKACTILLRGPS 378
Query: 639 DNYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKF 460
+ ++++ER + D + + + + PG GATE+ ++ +L E A ++ G+ Q+ R
Sbjct: 379 KDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAV 438
Query: 459 AVALESIPHALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSY 280
A A+E IP L N GAN + + ++ H EGQ + F ID E V D E G+ +
Sbjct: 439 ADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHS--FGIDGETGRVVDMHEYGVWEPE 496
Query: 279 LLKFWGIKYAVGAATTILKVDQIIMAKR 196
+K IK A+ +A +L+VD I+ R
Sbjct: 497 AVKLQSIKTAIESACLLLRVDDIVSGVR 524
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 107 bits (258), Expect = 1e-24
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 1/215 (0%)
Frame = -2
Query: 816 RLAKTVNATVLPRLTTPTTQELGYCDAVHVDEVGDTRVVVFK-MESSESRISTIVIRGST 640
RL+ + P +LG+C + +G+ +++ F +E+ E+ TIV+RG+T
Sbjct: 318 RLSLVTGGEIASTFDHPELVKLGHCKKIEEIIIGEDKMIKFSGVEAGEA--CTIVLRGAT 375
Query: 639 DNYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKF 460
+D+ ERAI D + + R G G E+ +A+ + E A PG + AV F
Sbjct: 376 HQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAF 435
Query: 459 AVALESIPHALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSY 280
A AL +P LADN+G +++E+V ++ AH +G G D+D + D + KGI+++
Sbjct: 436 AKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMD--EGEIADMRAKGILEAL 493
Query: 279 LLKFWGIKYAVGAATTILKVDQIIMAKRAGGPKPR 175
LK + A +L+VD I+ A P+PR
Sbjct: 494 KLKQAVVSSGSEGAQLLLRVDTILKA----APRPR 524
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 103 bits (248), Expect = 2e-23
Identities = 57/205 (27%), Positives = 103/205 (50%)
Frame = -2
Query: 813 LAKTVNATVLPRLTTPTTQELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDN 634
+ K+ + + + +LG+ D V ++V F + + +I+ RG+
Sbjct: 325 ICKSTGCKPIADIESFAEDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLL 384
Query: 633 YMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAV 454
+++ ER++ D + + + + + G G+ EIE AQ+LLE A L G E +R F+
Sbjct: 385 TLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSE 444
Query: 453 ALESIPHALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLL 274
ALE IP LA+N+G NA +VV ++ H G+K AG ++ V + E+ ++ L+
Sbjct: 445 ALEIIPVTLAENAGLNAIQVVTELRSRHANGEKTAGINV--RKGIVTNILEENVLQPLLV 502
Query: 273 KFWGIKYAVGAATTILKVDQIIMAK 199
I+ A I+K+D I +A+
Sbjct: 503 NISAIQLAAETTKMIMKIDDITLAR 527
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 96.7 bits (230), Expect = 3e-21
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 18/222 (8%)
Frame = -2
Query: 819 RRLAKTVNATVLPRLTTPTTQE------LGYCDAVHVDEVGDTRVVVFKMESSESRISTI 658
RR+AK AT+L L+ +E LG + V ++ D ++ K + S S I
Sbjct: 322 RRIAKASGATLLSSLSNLEGEETFESSYLGSAEEVVQEKFSDDECILVKGTKAYSSAS-I 380
Query: 657 VIRGSTDNYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQ 478
V+RG + +D++ER++ D ++ K G+ VPG GA E L+ L FA +L EQ
Sbjct: 381 VLRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQ 440
Query: 477 YAVRKFAVALESIPHALADNSGANATEVVNKIYKAH------------KEGQKNAGFDID 334
A+ +FA AL IP LA N+ ++TE+ K+ H K G KN G D+
Sbjct: 441 LAIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDL- 499
Query: 333 SENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQII 208
N + D + G+++ + K +K AV A IL++D I
Sbjct: 500 -LNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSI 540
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 67.3 bits (157), Expect = 2e-12
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 2/189 (1%)
Frame = -2
Query: 753 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 574
LG+ +V+ +G+ + F + + + +TI+I G + I+ A DG+ K
Sbjct: 343 LGWAGSVYERTLGEEKYT-FVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNAV 401
Query: 573 RDGRFVPGAGATEIELAQQLLE--FADTLPGLEQYAVRKFAVALESIPHALADNSGANAT 400
D + GAGA E+ A L A + G + V +A AL IP LA NS +
Sbjct: 402 EDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKTLAANSSYDTQ 461
Query: 399 EVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKV 220
+ + + + EG K G D+ + D + +GI D+Y + + A A+ ++ V
Sbjct: 462 DAIVALQEEASEGYK-VGLDL--KTGMPFDPEVEGIYDNYRVIRHMLHSATVIASNLISV 518
Query: 219 DQIIMAKRA 193
DQI+ A R+
Sbjct: 519 DQILRAGRS 527
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -2
Query: 819 RRLAKTVNATVLPR-LTTPTTQELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGS 643
R++ ++ + P + T T +LG C +H D K++S R S G
Sbjct: 31 RKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSD----------KLKSDYERASYSHDYGY 80
Query: 642 TDNYMDDIERAIDD 601
+Y++D+ER +DD
Sbjct: 81 EWDYLEDLERHVDD 94
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 802 CKCYGFTKINDPNYPGTWIL*CCTC 728
C CYGF +DP P L C TC
Sbjct: 360 CACYGFESDSDPRQPNQ--LLCYTC 382
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 686 SILNTTTRVSPTSSTCTASQYPSS 757
S N+TT SPTSS+ T+S SS
Sbjct: 94 SSTNSTTSASPTSSSLTSSSATSS 117
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 352 IFLSLLVCLVNFV--YNFSGIGTRVICQSMRYALK 450
IFL +L+CL+ +V Y+ + RV+ +S+ +K
Sbjct: 123 IFLEILMCLIGYVESYDRQFVNPRVLAESVDSYMK 157
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 260 IPQNFKRY--ESIMPFSFASQTPLFSESISKPAFFCPSL 370
+P +R+ + +P ++ + TP FS S K AF PSL
Sbjct: 434 LPPRLRRFFVDDYVPSAYITLTPTFSFSDIKHAFTKPSL 472
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 107 IKSMLYQMMQTNI*DSSSLPAGALGFGPPALFAIMI*STLRMVVAAPTAYFIPQNFKRYE 286
IKS + + N+ D S A AI + S +R + AP++ +P YE
Sbjct: 54 IKSRIEMDLFINLADQSKAEEFAFKNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSYE 113
Query: 287 SIMPFSFASQTPLFSESIS 343
++ + S +F+E+ S
Sbjct: 114 TLTYSAKDSSDDVFTETNS 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,860
Number of Sequences: 5004
Number of extensions: 67254
Number of successful extensions: 221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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