Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f12
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 402 WHWHPSYLPKHEVCSQEPLQTSLQHTVLNRAECQQTPITVVLIQFLLL 545
           W + PS L   EV   +P+   L   V+N  +  Q  + V     L+L
Sbjct: 415 WDYTPSSLELGEVAVHDPVFYQLYKKVMNLYQQYQQSLPVYQYNDLIL 462


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 426 PKHEVCSQEPLQTSLQHTVLNRAECQQTPITVVLIQ 533
           PK+ VC+   L++   + V+++      PI  + +Q
Sbjct: 34  PKNAVCALNELKSGAVYKVVDQTGPTHAPIFTIAVQ 69


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 275 KRYESIMPFSFASQTPLFSESISKPAFFCPSLCAL 379
           KR       +FA   P  + +I  P   CP +C L
Sbjct: 207 KRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICEL 241


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 556 YKSPISSNSLECINT 600
           Y SP+SS SL  +NT
Sbjct: 267 YYSPLSSRSLYYVNT 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,521
Number of Sequences: 438
Number of extensions: 4718
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)