Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f11
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   1.7  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    24   7.0  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    24   7.0  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   9.3  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.3  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = -1

Query: 262 FQMIVQKKPRKNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEE 83
           F+ + Q++ R+N+  +   QRE N     +     +++ + + E    E+ T SK+ + +
Sbjct: 395 FKRLKQQEDRRNENYRRRQQRESNQESESY---VDNVVIQRSVETQSTEVVTSSKSTSVD 451

Query: 82  KDLPKRARSI 53
              PK+ + I
Sbjct: 452 TKPPKKTQKI 461


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 357 NLTFIAFVEFCINCKSD 307
           NLTF  F ++C+ C +D
Sbjct: 359 NLTFDGFQDYCLMCGTD 375


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 136 DEDADYEIYTGSKNENEEKDLPK 68
           DED D E+    + E EEK+ P+
Sbjct: 269 DEDEDEELEGEKEEEEEEKEKPE 291


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 247 QKKPRKNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENE 86
           + KP+K+    +E Q  F+   G +   P+    +   ++ DYE  + S N+ E
Sbjct: 229 KSKPKKHVAFTDEYQVAFSDKPGKYFNQPMQYSKQFKLDNPDYEASSDSLNDIE 282


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = -1

Query: 304 IVNYLRKLSFLLTDFQMIVQKKPRKNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDA 125
           +V+ L + S    D ++    K  + K+    L++   +I G  + +PV++   G DE+ 
Sbjct: 672 VVDALDEESRQALDVELNKLLKWNQRKKSALFLRKTTKYIPGEETSLPVTMDELGIDEEI 731

Query: 124 DYEIYTGSKNENEEKD 77
             E+  G +++ +E D
Sbjct: 732 MAEL-RGDEDDQDEND 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,598
Number of Sequences: 5004
Number of extensions: 19652
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)