Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f11
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical ...    27   3.4  
AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical ...    27   3.4  
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    27   6.0  
AL117206-7|CAE18041.2|  170|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6b protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 193 NFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEEKD 77
           +F   IFS+ P+S  T    ED+  +++    N+ E  D
Sbjct: 395 SFCHSIFSIAPISSNTFENAEDSGDDLFNNDSNDEESGD 433


>AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 193 NFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEEKD 77
           +F   IFS+ P+S  T    ED+  +++    N+ E  D
Sbjct: 395 SFCHSIFSIAPISSNTFENAEDSGDDLFNNDSNDEESGD 433


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 250 VQKKPRKNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDADYEIYTGSK 98
           V  K R +++++  L+     +  + S +  +I T+  DED   EIY  +K
Sbjct: 29  VYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTK 79


>AL117206-7|CAE18041.2|  170|Caenorhabditis elegans Hypothetical
           protein Y67A10A.10 protein.
          Length = 170

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 232 KNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDADYEIYTGSKN-ENEEKDLPKRA 62
           K K +KN  QR  + + G+F++     LT  + ED+   +  G  + E ++ D   RA
Sbjct: 77  KQKALKNWAQRCGDPVNGLFTMYMAEKLTLQSQEDSRMAVIIGQLSPEAQQADTKVRA 134


>AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical
           protein F43C11.6 protein.
          Length = 247

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 122 VCVFIGTFC*N*NRHN*KYAFYKVELSLQL 211
           +C+F+G FC    + N  Y F KVE + +L
Sbjct: 174 LCIFLGIFCIFGYQFNIGYGFLKVERNNRL 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,654,575
Number of Sequences: 27780
Number of extensions: 109774
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)