Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f11
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 175 FSVMPVSILTKGADEDADY 119
           +S +P+  LTK  +ED  Y
Sbjct: 93  WSTLPIEDLTKSDNEDITY 111


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 175 FSVMPVSILTKGADEDADY 119
           +S +P+  LTK  +ED  Y
Sbjct: 131 WSTLPIEDLTKSDNEDITY 149


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 16  VISIFPISLPTQQCSGPVLVNPFPHFHFYC 105
           +IS  PISL   + + PV+++     H  C
Sbjct: 155 LISFVPISLGLHRANEPVVLDDSKEEHPTC 184


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 181 GIFSVMPVSILTKGADEDADYEIYTGSKNENEEK 80
           GIF  +  ++ T+ + + + YEI+      +E K
Sbjct: 343 GIFGALMAALATEASYDYSLYEIFPARAPNSETK 376


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 91   NEEKDLPKRARS 56
            +E+K LP+R RS
Sbjct: 1833 SEQKSLPRRGRS 1844


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 91   NEEKDLPKRARS 56
            +E+K LP+R RS
Sbjct: 1829 SEQKSLPRRGRS 1840


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,203
Number of Sequences: 438
Number of extensions: 1391
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)