Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f10
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 136 5e-33
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 123 3e-29
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 58 2e-09
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 53 4e-08
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 46 7e-06
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 44 3e-05
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 42 1e-04
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 39 8e-04
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 36 0.007
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 34 0.028
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 33 0.038
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 32 0.11
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 30 0.46
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 28 1.9
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 3.3
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 5.7
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 7.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 10.0
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 10.0
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 10.0
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 136 bits (328), Expect = 5e-33
Identities = 72/159 (45%), Positives = 95/159 (59%), Gaps = 8/159 (5%)
Frame = -2
Query: 771 PPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPS-TPSH-YTLHAVLVHS 598
P VL L L RF YD RD VK NDR EF EI+L+PYL E + SH Y LH VLVH
Sbjct: 415 PNVLQLQLKRFDYDMLRDMMVKINDRHEFPLEIDLEPYLSETADKSESHVYVLHGVLVHG 474
Query: 597 GDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGG------KEDAPHMARKA 436
GD HGGHY I P+ D W KFDDD V+R T +E +E NYGG K + ++
Sbjct: 475 GDLHGGHYYALIKPEKDSNWFKFDDDRVTRATIKEVLEDNYGGEPAGRAKGYNGNPFKRF 534
Query: 435 TSAYMLIYIQTTQLKYVLQDASESDIPPDLCDRINEEMR 319
+AYML+Y + ++L ++L + D+P + + ++EE R
Sbjct: 535 MNAYMLVYFRKSRLDHILSPVTAEDVPFHVRNTLDEEHR 573
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 123 bits (297), Expect = 3e-29
Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Frame = -2
Query: 771 PPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYL--QEVPSTPSHYTLHAVLVHS 598
PP+LHL L RF+YD +RD +K NDR+EF E + +L + S Y L+ VLVHS
Sbjct: 398 PPILHLQLKRFEYDFERDMMIKINDRYEFPLEFDAKAFLSPEADQSQNCEYVLYGVLVHS 457
Query: 597 GDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKE------DAPHMARKA 436
GD H GHY + + DG W K+DD V+R T +E +E NYGG +P ++
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLEENYGGDYIMHPPFRSPVKLKRF 517
Query: 435 TSAYMLIYIQTTQLKYVLQDASESDIPPDLCDRINEEMRYEMVR 304
SAYML+Y++ +L ++ S +IP L + +N ++ +R
Sbjct: 518 MSAYMLLYLRKDKLDELMNPVSADEIPEHLKEALNPSIQLAELR 561
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 58.0 bits (134), Expect = 2e-09
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = -2
Query: 774 SPPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSG 595
+P +L +H RF ++ + S K + + + E NL PY+ + P+ Y L VLVH+G
Sbjct: 325 APNILTIHFKRFTFNGFQ--SSKISKQISYPESFNLGPYMSD-PNCSCWYELIGVLVHAG 381
Query: 594 DN-HGGHYVVFINPKGDGKWCKFDDDVVS 511
+ GHY F +G W KFDDD VS
Sbjct: 382 GSTRSGHYYSFCK-SSNGVWLKFDDDFVS 409
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 53.2 bits (122), Expect = 4e-08
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Frame = -2
Query: 771 PPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVH-SG 595
P +L LHL RF+Y+ ++ K F E+ L ++ + Y L +V+VH G
Sbjct: 310 PKILSLHLKRFKYNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSVIVHVGG 369
Query: 594 DNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAPHMARKATSAYMLI 415
H GHYV + K G W FDD+ V+ + ++ +G D P A +AY+L
Sbjct: 370 GPHRGHYVSIVRTKTYG-WVLFDDENVTP-VNENYLQRFFG---DQPGQA----TAYVLF 420
Query: 414 Y 412
Y
Sbjct: 421 Y 421
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 46.0 bits (104), Expect = 7e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = -2
Query: 771 PPVLHLHLLRFQYDPQRDASV---KFNDRFEFYEEINLDPYLQEV--PSTPSHYTLHAVL 607
PPV +HL RF + D K +D EF +E++L+ ++ S+ Y L V+
Sbjct: 743 PPVFIIHLKRFFQEISHDGYANPKKISDFIEFEQELDLNEFVMPHLRASSSFRYRLFGVI 802
Query: 606 VHSGDNHGGHYVVFI 562
VHSG + GHYV ++
Sbjct: 803 VHSGTLNYGHYVAYV 817
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 651 EVPSTPSHYTLHAVLVHSGDN-HGGHYVVFINPKGDGK--WCKFDDDVVSRCTKQE 493
E + P +Y L A++ H G + H GHYV FI + DGK W F+D+ V + E
Sbjct: 705 ESTNVPVNYNLKAIISHKGSSAHAGHYVAFIRKEIDGKQQWVLFNDEKVLQVASLE 760
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 41.9 bits (94), Expect = 1e-04
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Frame = -2
Query: 771 PPVLHLHLLRFQYDPQRDASVKFND-RFEFYEEINLDPYLQEVP-STPSHYTLHAVLVHS 598
PPVL LHL RF Y+ + + I + + V S Y L+AV+ H
Sbjct: 386 PPVLILHLKRFFYEASGGTQKNYKPIAYPARLSIPQNVFSPSVRGSIHPEYDLNAVVYHH 445
Query: 597 GDN-HGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAPHMARKATSAYM 421
G + GGHY V + W + DD + R + + AY+
Sbjct: 446 GTSASGGHYTVDVQQLDKSGWFRIDDTHIHRVPIHDVENSELSADPSLSKLGHGDRVAYL 505
Query: 420 LIY 412
L Y
Sbjct: 506 LFY 508
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 39.1 bits (87), Expect = 8e-04
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Frame = -2
Query: 771 PPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLD------PY-LQEVPSTPSHYTLHA 613
P +L HL RF +R K +D EF + NLD Y L E + Y L+A
Sbjct: 867 PEILIFHLKRFS--SERRFRDKIDDLVEFPID-NLDMSMRTGSYKLSEKENPKLIYELYA 923
Query: 612 VLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 487
V H G GGHY F +G++ FDD V+ +E +
Sbjct: 924 VDNHYGGLGGGHYTAFAKNPDNGQFYCFDDSRVTPVCPEETV 965
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 636 PSHYTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVV 514
PS+Y L A + H G GHY+ + + +WC DD +V
Sbjct: 356 PSNYNLFAFICHYGQLENGHYISDV--LFNNEWCHIDDSIV 394
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 33.9 bits (74), Expect = 0.028
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 630 HYTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 487
HY L +++ HSG GHY+ + D W K +D ++++ + EA+
Sbjct: 285 HYILRSLITHSGSVTYGHYLCY--RLQDDIWWKANDSLITKSSLNEAL 330
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 33.5 bits (73), Expect = 0.038
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -2
Query: 627 YTLHAVLVHSGDN-HGGHYVVFI-NPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAP 454
Y L VL H+G + GHY +I N +W +F+D VS E IE GG E
Sbjct: 397 YDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVS-IVPAEKIETLDGGGE--- 452
Query: 453 HMARKATSAYMLIY 412
A SAY+L+Y
Sbjct: 453 -----ADSAYILLY 461
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 633 SH-YTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDA 457
SH Y L AV VH G GHY +I+ + + K++D+ V+ + E G +
Sbjct: 1057 SHSYDLLAVFVHRGQASFGHYWTYIHDFENNVYRKYNDEYVTVVDESEIFADTTGNNAN- 1115
Query: 456 PHM 448
P+M
Sbjct: 1116 PYM 1118
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 29.9 bits (64), Expect = 0.46
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 627 YTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 487
Y L+AV H G GHY + + KFDD + ++ +
Sbjct: 790 YDLYAVDNHHGFMSNGHYTAYARDASSQTFFKFDDTAICEIDPEDIV 836
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -2
Query: 627 YTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 487
Y L++V+ H G GHY+ + + +W DD + + E +
Sbjct: 379 YQLYSVVCHKGTLDTGHYIAYTYYQ--NQWFLLDDTTIVEVKESEVL 423
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 717 ASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGG 580
+ V FND Y + + + V + H+ H ++V+SG GG
Sbjct: 405 SEVPFNDSNSIYHLFQSELFPKIVVNESRHHIPHYIIVNSGGIRGG 450
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 377 TLPNPTYRQISVIESTKKCDTRW 309
T NP RQ++ IE+ K C W
Sbjct: 51 TCENPQVRQLAAIEARKLCHKYW 73
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 768 PVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYL-QEVPSTPSHYTLHAVLV 604
P+L + L DP ++S FN EF I L+ L +E S H VL+
Sbjct: 152 PLLRIPTLAIHLDPSANSSFSFNMETEFVPLIGLENELAKEETSDNGDKYHHPVLL 207
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/51 (25%), Positives = 19/51 (37%)
Frame = -2
Query: 705 FNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGGHYVVFINPK 553
FN EF E+ N + + E P H ++ D HY P+
Sbjct: 1130 FNQHLEFVEQRNTNAMVDEGSDAPFHVGNEYYVIAGSDPSDFHYCFCRQPE 1180
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 475 VVVFDGFLLSATRHHVVVELTPLSVA 552
VVVF G LL+ + + + LTPL +A
Sbjct: 103 VVVFTGELLAKAENMIRMGLTPLEIA 128
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -2
Query: 618 HAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNY--GGKED 460
H V+SG + G +F + K FD + C +Y+Y G K D
Sbjct: 692 HITRVYSGTDDGSSVSIFEDTSSSTKQKIFDQPTTNDCDVMRPRQYSYSAGMKSD 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,375
Number of Sequences: 5004
Number of extensions: 68719
Number of successful extensions: 206
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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