Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f10
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = -2

Query: 750 LLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGGHYV 571
           +L+F+Y    DA +KF++   +  +I    +++++  TP+ Y  +        N+    +
Sbjct: 65  MLQFRY---LDARLKFSNIAPYLNQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVL 121

Query: 570 VFINPKG 550
           V I+P G
Sbjct: 122 VSIDPSG 128


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 478 LRREGRRPSHGQESHKRLHAYLHSNY 401
           +RR+ RR ++G   H   H   H+N+
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANH 286


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 281 ARNLNRTRLSRPQNATPRYLAH*NISSL 198
           AR++    ++  +N  PRYL+   IS+L
Sbjct: 424 ARHIPHASVTDSENTVPRYLSPDVISAL 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,327
Number of Sequences: 438
Number of extensions: 5449
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)