Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f09
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.4  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    26   7.2  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    26   7.2  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 499 PNADVSHQQSYPGCVASVIFS-GYIIFVEAM-YVFLLAVNIFQY 624
           P ADV   ++  GC A  IF    I+ ++A+ Y FL+  N   Y
Sbjct: 62  PPADVREWKNSSGCWAPKIFERAVIVIIDALRYDFLIPYNDSNY 105


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 795 IFWFILSILNLIESTRSRLSHFSL 724
           I WFI + L L+ + RS L+ FSL
Sbjct: 194 ICWFIFTFLVLLCTVRSTLAFFSL 217


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 652 INQEQNSVNHVDSDHCCSDYGEGQQREVRE 741
           I ++ N V+H DS H   +  +    EV+E
Sbjct: 270 IKEKSNEVDHKDSQHVVDEVAQTSPPEVKE 299


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 210 FPSFSLTK*RYVLIKQTSKITRAVLRRIYHRIGI 109
           +PSF     R + ++Q +K+ +   R  YH IGI
Sbjct: 128 YPSFDTPNARILQLRQLAKLKKHGPRISYHGIGI 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,884
Number of Sequences: 5004
Number of extensions: 54304
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)