Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f09
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982...    29   3.3  
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727...    29   4.3  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    29   5.7  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    28   7.5  
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873...    28   9.9  

>02_05_0469 +
           29297209-29297527,29297847-29297961,29298060-29298255,
           29298427-29298540,29298695-29298868,29299326-29299520,
           29299666-29299788,29299892-29300004,29300117-29300237,
           29300363-29300623,29301712-29301921
          Length = 646

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 485 KSSIFGSSKTTTLLQWLRDVNRNDVKTVTFLKPHITLI 372
           KS +F   K T  + WL  +NRN ++     + H+  +
Sbjct: 346 KSRVFSDGKATVKIDWLEQLNRNYIQVQGRDRNHVKFV 383


>02_02_0155 +
           7272563-7272630,7272934-7273031,7273491-7274057,
           7275121-7276085,7276201-7276388,7276497-7276938
          Length = 775

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
 Frame = -3

Query: 795 IFWFILSILNLIESTRSRLSHFSLLPFTVVGTAVIA-VDVIYAILFLVDVGYTGNQASIL 619
           +F+F L+I  L ES R  +S   +     V   +    DV   +  LV+    G   SI 
Sbjct: 204 LFFFGLTIFYLPESPRWLVSKGRMAEAKKVLQKLRGREDVSGEMALLVEGLEVGADTSIE 263

Query: 618 EYIDGQ-----EKHVHSFNKDNISTKYDRSDTSWIALLMAYVSIRGVVVEV 481
           EYI G      ++HV   +KD I+        SWIA      SI G V+ +
Sbjct: 264 EYIIGPAIEPADEHVVDGDKDQITLYGPEEGQSWIARPSKGPSILGSVLSL 314


>03_02_0859 -
           11853928-11854138,11854225-11854683,11854760-11854991,
           11855064-11855187,11855276-11855960,11856429-11856735,
           11856832-11858188
          Length = 1124

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 442 CSKVVVFDDPKIEDFHYDAPNADVSHQQSYPGCVASVIFSGYIIFVEAMYVFLLAVNIFQ 621
           CS V       +     D   A   H+++Y     +  ++ Y I  + ++VFL+AV +FQ
Sbjct: 305 CSLVAALSGVWLRTHKADLELAQFFHKKNYVSDDKNANYNYYGIAAQIVFVFLMAVIVFQ 364


>01_06_1742 -
           39585879-39585994,39586089-39586238,39586288-39586375,
           39586479-39586640,39586753-39586877,39586992-39587030,
           39587290-39587476,39587643-39587713,39589371-39589564,
           39589656-39589767,39589899-39590082,39590177-39590503,
           39590780-39591061,39591148-39591621,39591730-39591813,
           39591850-39591939,39592024-39592247,39592503-39592600,
           39592679-39593169,39593249-39593520,39594266-39594522,
           39594672-39594890,39595007-39595167,39595249-39595441,
           39595528-39595633,39595947-39596121,39596404-39596556,
           39596663-39596794,39597120-39597184,39597754-39597819,
           39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 228 YEKLPLFPSFSLTK*RYVLIKQTSKITRAVLRRIYHRIGIATH 100
           YE + +F SFS ++    LI    KIT  V+ R+  +IG   H
Sbjct: 347 YELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAH 389


>03_06_0292 -
           32886148-32886354,32886997-32887154,32887265-32887378,
           32887660-32887924
          Length = 247

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/14 (71%), Positives = 14/14 (100%)
 Frame = +1

Query: 535 GCVASVIFSGYIIF 576
           GCVA++IFSG+II+
Sbjct: 193 GCVAALIFSGFIIY 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,760,456
Number of Sequences: 37544
Number of extensions: 323493
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)