Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f09
         (800 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036035-1|AAH36035.1|  979|Homo sapiens DHX36 protein protein.        32   2.8  
AJ577134-1|CAE11803.1|  994|Homo sapiens putative DExH/D RNA hel...    32   2.8  
AJ577133-1|CAE11802.1| 1008|Homo sapiens putative DExH/D RNA hel...    32   2.8  
AF217190-1|AAG36783.1| 1008|Homo sapiens MLEL1 protein protein.        32   2.8  
AB040921-1|BAA96012.1|  852|Homo sapiens KIAA1488 protein protein.     32   2.8  

>BC036035-1|AAH36035.1|  979|Homo sapiens DHX36 protein protein.
          Length = 979

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 388 GFRKVTVFTSLRFTSLSHCSKVVVFDDPKIEDFHYDAPN 504
           G RK+ + T++  TS++    V V D  KI++ H+D  N
Sbjct: 543 GVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQN 581


>AJ577134-1|CAE11803.1|  994|Homo sapiens putative DExH/D RNA
           helicase protein.
          Length = 994

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 388 GFRKVTVFTSLRFTSLSHCSKVVVFDDPKIEDFHYDAPN 504
           G RK+ + T++  TS++    V V D  KI++ H+D  N
Sbjct: 529 GVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQN 567


>AJ577133-1|CAE11802.1| 1008|Homo sapiens putative DExH/D RNA
           helicase protein.
          Length = 1008

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 388 GFRKVTVFTSLRFTSLSHCSKVVVFDDPKIEDFHYDAPN 504
           G RK+ + T++  TS++    V V D  KI++ H+D  N
Sbjct: 543 GVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQN 581


>AF217190-1|AAG36783.1| 1008|Homo sapiens MLEL1 protein protein.
          Length = 1008

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 388 GFRKVTVFTSLRFTSLSHCSKVVVFDDPKIEDFHYDAPN 504
           G RK+ + T++  TS++    V V D  KI++ H+D  N
Sbjct: 543 GVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQN 581


>AB040921-1|BAA96012.1|  852|Homo sapiens KIAA1488 protein protein.
          Length = 852

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 388 GFRKVTVFTSLRFTSLSHCSKVVVFDDPKIEDFHYDAPN 504
           G RK+ + T++  TS++    V V D  KI++ H+D  N
Sbjct: 387 GVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQN 425


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,828,683
Number of Sequences: 237096
Number of extensions: 1754240
Number of successful extensions: 7547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7547
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)