Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f08
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0794 + 6989069-6989300,6989893-6989966,6990303-6990372,699...    31   1.1  
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560     28   10.0 

>11_01_0794 +
           6989069-6989300,6989893-6989966,6990303-6990372,
           6991099-6991280
          Length = 185

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
 Frame = +1

Query: 220 VTLKLLSVCVFEIWFKSDA-TL---IAFNPTQMRP*FRNCHIVAVKP-KSAMCKNYFELT 384
           +  +++SV V E+W    A TL   + + P+ +       +++A +P K A    Y+ELT
Sbjct: 71  INAEIVSVTVTEVWIAVLAYTLSRHLGWAPSLVNQEAIPPNMIATRPSKKAKISEYYELT 130

Query: 385 SKNIFAY 405
           ++N+FA+
Sbjct: 131 NQNLFAH 137


>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
          Length = 546

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 308 RICVGLKAIRVASLLNHISKTHTESNFNVTLN 213
           RI   +  IRV ++LN++S+T    N+++TL+
Sbjct: 305 RIKTTVGIIRVNNMLNNLSQTRHPKNYDITLS 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,239,835
Number of Sequences: 37544
Number of extensions: 277592
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)