Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f08
(803 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118413-1|AAM48442.1| 589|Drosophila melanogaster RE66761p pro... 31 2.4
AE014134-2137|AAN10798.1| 589|Drosophila melanogaster CG6756-PC... 31 2.4
AE014134-2136|AAN10797.1| 589|Drosophila melanogaster CG6756-PB... 31 2.4
AE014134-2135|AAF53148.2| 589|Drosophila melanogaster CG6756-PA... 31 2.4
U49793-1|AAB57632.1| 877|Drosophila melanogaster transcriptiona... 30 4.3
BT001565-1|AAN71320.1| 877|Drosophila melanogaster RE16782p pro... 30 4.3
AE014297-993|AAF54419.2| 877|Drosophila melanogaster CG9495-PA ... 30 4.3
AE014134-1416|ABI31300.1| 2682|Drosophila melanogaster CG8486-PC... 29 5.6
AE014134-1415|AAN11153.1| 2720|Drosophila melanogaster CG8486-PB... 29 5.6
AE014134-1414|AAF52611.1| 2771|Drosophila melanogaster CG8486-PA... 29 5.6
U70874-1|AAB09592.1| 666|Drosophila melanogaster hepatocyte nuc... 29 9.8
BT003533-1|AAO39537.1| 704|Drosophila melanogaster RE09535p pro... 29 9.8
BT001800-1|AAN71555.1| 738|Drosophila melanogaster RH29074p pro... 29 9.8
AE014134-1555|AAF52703.1| 666|Drosophila melanogaster CG9310-PC... 29 9.8
AE014134-1554|AAN10680.1| 732|Drosophila melanogaster CG9310-PB... 29 9.8
AE014134-1553|AAF52702.2| 704|Drosophila melanogaster CG9310-PA... 29 9.8
>AY118413-1|AAM48442.1| 589|Drosophila melanogaster RE66761p
protein.
Length = 589
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 146 YRLTRFLMQSTFHLLCGIFVK 208
Y++ LM+ TFHLLCG +V+
Sbjct: 294 YKVEALLMRGTFHLLCGSYVE 314
>AE014134-2137|AAN10798.1| 589|Drosophila melanogaster CG6756-PC,
isoform C protein.
Length = 589
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 146 YRLTRFLMQSTFHLLCGIFVK 208
Y++ LM+ TFHLLCG +V+
Sbjct: 294 YKVEALLMRGTFHLLCGSYVE 314
>AE014134-2136|AAN10797.1| 589|Drosophila melanogaster CG6756-PB,
isoform B protein.
Length = 589
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 146 YRLTRFLMQSTFHLLCGIFVK 208
Y++ LM+ TFHLLCG +V+
Sbjct: 294 YKVEALLMRGTFHLLCGSYVE 314
>AE014134-2135|AAF53148.2| 589|Drosophila melanogaster CG6756-PA,
isoform A protein.
Length = 589
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 146 YRLTRFLMQSTFHLLCGIFVK 208
Y++ LM+ TFHLLCG +V+
Sbjct: 294 YKVEALLMRGTFHLLCGSYVE 314
>U49793-1|AAB57632.1| 877|Drosophila melanogaster transcriptional
repressor protein protein.
Length = 877
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 146 TCSNFLTKAYSRIHYCFSVCSLTRNSY-NKTFVLICCMFKQKKCNCKLR 3
TC KAYS+ C ++ R+ NK F I CM K +K NC R
Sbjct: 90 TCIAEFRKAYSK-GACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTR 137
>BT001565-1|AAN71320.1| 877|Drosophila melanogaster RE16782p
protein.
Length = 877
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 146 TCSNFLTKAYSRIHYCFSVCSLTRNSY-NKTFVLICCMFKQKKCNCKLR 3
TC KAYS+ C ++ R+ NK F I CM K +K NC R
Sbjct: 90 TCIAEFRKAYSK-GACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTR 137
>AE014297-993|AAF54419.2| 877|Drosophila melanogaster CG9495-PA
protein.
Length = 877
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 146 TCSNFLTKAYSRIHYCFSVCSLTRNSY-NKTFVLICCMFKQKKCNCKLR 3
TC KAYS+ C ++ R+ NK F I CM K +K NC R
Sbjct: 90 TCIAEFRKAYSK-GACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTR 137
>AE014134-1416|ABI31300.1| 2682|Drosophila melanogaster CG8486-PC,
isoform C protein.
Length = 2682
Score = 29.5 bits (63), Expect = 5.6
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 782 KICLXALLRIFLLTFSYSSQPYLPYKKICYVSYSFNIYL*LSFDIVLK 639
+IC AL FLL F SS+ ++ KI Y + F I+ + DI LK
Sbjct: 712 RICYMALFLFFLLVFQSSSKAWV---KIMYGFWLFLIFYAMQKDIGLK 756
>AE014134-1415|AAN11153.1| 2720|Drosophila melanogaster CG8486-PB,
isoform B protein.
Length = 2720
Score = 29.5 bits (63), Expect = 5.6
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 782 KICLXALLRIFLLTFSYSSQPYLPYKKICYVSYSFNIYL*LSFDIVLK 639
+IC AL FLL F SS+ ++ KI Y + F I+ + DI LK
Sbjct: 712 RICYMALFLFFLLVFQSSSKAWV---KIMYGFWLFLIFYAMQKDIGLK 756
>AE014134-1414|AAF52611.1| 2771|Drosophila melanogaster CG8486-PA,
isoform A protein.
Length = 2771
Score = 29.5 bits (63), Expect = 5.6
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 782 KICLXALLRIFLLTFSYSSQPYLPYKKICYVSYSFNIYL*LSFDIVLK 639
+IC AL FLL F SS+ ++ KI Y + F I+ + DI LK
Sbjct: 712 RICYMALFLFFLLVFQSSSKAWV---KIMYGFWLFLIFYAMQKDIGLK 756
>U70874-1|AAB09592.1| 666|Drosophila melanogaster hepatocyte
nuclear factor 4 homologprotein.
Length = 666
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 415 TLRHSPLSFSPDLLSGSRFRSGGRFCEALLLL 510
+LRH L+ D +S ++ S GRF E LL+L
Sbjct: 365 SLRHQILNNLEDYISDRQYESRGRFGEILLIL 396
>BT003533-1|AAO39537.1| 704|Drosophila melanogaster RE09535p
protein.
Length = 704
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 415 TLRHSPLSFSPDLLSGSRFRSGGRFCEALLLL 510
+LRH L+ D +S ++ S GRF E LL+L
Sbjct: 403 SLRHQILNNLEDYISDRQYESRGRFGEILLIL 434
>BT001800-1|AAN71555.1| 738|Drosophila melanogaster RH29074p
protein.
Length = 738
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 415 TLRHSPLSFSPDLLSGSRFRSGGRFCEALLLL 510
+LRH L+ D +S ++ S GRF E LL+L
Sbjct: 437 SLRHQILNNLEDYISDRQYESRGRFGEILLIL 468
>AE014134-1555|AAF52703.1| 666|Drosophila melanogaster CG9310-PC,
isoform C protein.
Length = 666
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 415 TLRHSPLSFSPDLLSGSRFRSGGRFCEALLLL 510
+LRH L+ D +S ++ S GRF E LL+L
Sbjct: 365 SLRHQILNNLEDYISDRQYESRGRFGEILLIL 396
>AE014134-1554|AAN10680.1| 732|Drosophila melanogaster CG9310-PB,
isoform B protein.
Length = 732
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 415 TLRHSPLSFSPDLLSGSRFRSGGRFCEALLLL 510
+LRH L+ D +S ++ S GRF E LL+L
Sbjct: 431 SLRHQILNNLEDYISDRQYESRGRFGEILLIL 462
>AE014134-1553|AAF52702.2| 704|Drosophila melanogaster CG9310-PA,
isoform A protein.
Length = 704
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 415 TLRHSPLSFSPDLLSGSRFRSGGRFCEALLLL 510
+LRH L+ D +S ++ S GRF E LL+L
Sbjct: 403 SLRHQILNNLEDYISDRQYESRGRFGEILLIL 434
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,764,630
Number of Sequences: 53049
Number of extensions: 516836
Number of successful extensions: 975
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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