Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f08
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016664-6|AAB66063.1|  155|Caenorhabditis elegans Hypothetical ...    29   2.9  
U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>AF016664-6|AAB66063.1|  155|Caenorhabditis elegans Hypothetical
           protein D2062.5 protein.
          Length = 155

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 791 VKPKICLXALLRIFLLTFSYSSQPYLPYKKICYVSYSFNIYL 666
           VK KI     L  FL  F++SS+ ++  +   Y SY FNI+L
Sbjct: 14  VKIKIYEFHRLSTFLRIFNHSSEFFIMQESDEYQSYEFNIWL 55


>U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical
           protein C25F6.4 protein.
          Length = 767

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = -1

Query: 287 AIRVASLLNHISKTHTESNFNVTLNLF*QIFHRVNEMCSALKIELIYTCSNFLTKAYSRI 108
           +I+ +S    +++ H  S  N+TL     +  ++    SA   +L+  C       ++ +
Sbjct: 334 SIKFSSDWMFLTEVHFTSAANLTL-----LSEKIPPPSSAATQQLLVVCGIIFLTIFACV 388

Query: 107 HYCFSVCSLTRNSYNKT 57
            YC SVC L R   NK+
Sbjct: 389 AYCVSVC-LKRRQKNKS 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,794
Number of Sequences: 27780
Number of extensions: 293498
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)