Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f07
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 30 0.48
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 29 0.64
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 29 0.84
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 28 1.5
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 27 2.6
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 2.6
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 26 5.9
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 5.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 5.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.9
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.9 bits (64), Expect = 0.48
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Frame = -3
Query: 821 APAETTSPQHQTVL---LLENEA-DHVKIRTVLEEDLQYSDSGS--SELEEVEQKDIVDT 660
APA P+ + + EN+A D V +++ + ED + S S E + + I
Sbjct: 447 APAPENKPEKSSTSKPPVPENKAEDSVVLKSSVPEDKSENSIASKPSATEGIPENAIA-- 504
Query: 659 IQLCV---KPEDTTLDEPSMISDPSDFPTTIKREVTDD-------LPPPSDDFVDLDQPT 510
+Q V K ED+ + + S+ D S+ K V +D + +DD + + T
Sbjct: 505 LQSSVPENKAEDSVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKT 564
Query: 509 DFTFPSIVKEEPIEPDMNMVPAMI 438
+ PS+V+EE + N P++I
Sbjct: 565 EGYTPSVVREEKNYSEPNASPSVI 588
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 29.5 bits (63), Expect = 0.64
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 777 PRKRGRPRKDQNSFGRRSSILGQ 709
PRKRGRPRK NS S+ L Q
Sbjct: 1476 PRKRGRPRKKTNSGSSLSTPLSQ 1498
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.84
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 752 KIRTVLEEDLQ--YSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDPSDFPT 582
K+ + E+DL SD+ S L + + ++ + TTLD+PS+ DP FPT
Sbjct: 201 KLVRMTEDDLLAIVSDNFSLPLSSSQSSSLANSYESL----STTLDKPSLTLDPEAFPT 255
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 734 EEDLQYSDSGSSELEEVEQKDIVDTI 657
+ED++ SDS S+ E +E++ I+D I
Sbjct: 30 QEDVEESDSDESDFEGLEEETIIDRI 55
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 134 DGEWLPSPMDFSNASAEPSRCLTF 205
DG+ L SP DF NAS P +T+
Sbjct: 91 DGDILTSPGDFENASTSPVSDVTY 114
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Frame = -2
Query: 789 DGAT--PRKRGRPRKDQN 742
DG T PRKRGRPRK N
Sbjct: 479 DGMTLLPRKRGRPRKSAN 496
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 692 EEVEQKDIVDTIQL----CVKPEDTTLDEPSMISDP 597
E+++ D VD ++ VKP+D D P MI DP
Sbjct: 246 EDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDP 281
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 204 LLHSPTPFKCLLFEDFRGNFSKTFIFSH 287
L+ +PT K L E F+G +S+ +I SH
Sbjct: 31 LVFNPTEVKAPLVEQFQGAWSERWIPSH 58
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 788 TVLLLENEADHVKIRTVLEEDLQYSDSGSSELEEVEQKDIVDTIQL 651
++L NE H+ + +L D D+ S LE VEQ D+V TI L
Sbjct: 277 SLLFPSNELSHIN-KPILNMD----DNPYSILERVEQVDVVPTICL 317
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 548 PPSDDFVDLDQPTDFTFPS---IVKEEPIEPDMNMVP 447
P S+DF+D+ +P + PS + +E+P+E + P
Sbjct: 498 PDSEDFMDITRPFNILSPSKEALSEEQPMELTSTVFP 534
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 716 SDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIKREVTDDL 552
S +GS++ + +K +VD + C +D + DE + I P + +K + +DL
Sbjct: 5 SKNGSNDNNNIIKK-LVDAEKHCNAVKDASFDERTWIWIPDSKESFVKAWIVEDL 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,196
Number of Sequences: 5004
Number of extensions: 70663
Number of successful extensions: 309
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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