Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f07
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0242 + 21210062-21210541 36 0.031
04_01_0491 - 6459906-6460457 35 0.072
01_05_0327 + 20984336-20985478 33 0.22
12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569 32 0.67
09_01_0027 - 469856-470773,470780-471261,471296-471408,471453-47... 31 0.89
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 31 0.89
02_05_1175 - 34706870-34707616 31 1.2
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 31 1.5
12_01_0419 - 3316866-3318172,3318249-3318360 30 2.0
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 30 2.7
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 30 2.7
01_06_1259 - 35810926-35811777 30 2.7
12_02_0442 - 19118536-19119222 29 3.6
08_02_1281 - 25849918-25851099 29 3.6
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 29 3.6
04_04_1637 - 34957626-34957883,34958271-34958420,34958522-349586... 29 3.6
02_01_0381 - 2764331-2764342,2768966-2769907 29 3.6
05_07_0359 - 29539294-29540832,29542366-29542518 25 4.2
11_06_0123 + 20334350-20334553,20335059-20335490,20336052-203361... 29 4.7
09_04_0041 - 14051870-14052430,14052509-14052562 29 4.7
11_03_0190 - 11350497-11350832,11351926-11352303,11353897-113541... 29 6.2
06_01_0066 - 554637-555548 29 6.2
04_04_0885 - 29086426-29086767 29 6.2
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346... 29 6.2
03_04_0015 + 16453138-16453356,16453446-16453970 29 6.2
12_02_0240 - 16174724-16174927,16175005-16175097,16175199-161752... 28 8.3
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 28 8.3
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 28 8.3
>02_04_0242 + 21210062-21210541
Length = 159
Score = 36.3 bits (80), Expect = 0.031
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -2
Query: 852 PPPRTRSAAGGARGNHKPSTSDGATPRKRGRPRKDQNSFGRRSSI 718
PPP AGG RG DGA PR+R R R+ + SS+
Sbjct: 10 PPPSLPDLAGGGRGEAGGGGGDGAGPRRRRRARRGRGGGSPPSSL 54
>04_01_0491 - 6459906-6460457
Length = 183
Score = 35.1 bits (77), Expect = 0.072
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -2
Query: 804 KPSTSDGATPRKRGRPRKDQNSFGRRSSILGQ 709
+P +SDGATPR R RPRK +S R S + G+
Sbjct: 36 EPPSSDGATPR-RVRPRKSPSSSDRHSKVAGR 66
>01_05_0327 + 20984336-20985478
Length = 380
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNHKPSTSDGATPRK-RGRPRKDQNSFGRRS 724
PPPPR+ +AA A + + SDG RK +G+ +++ S G RS
Sbjct: 71 PPPPRSSAAAASAE---EATGSDGLRERKQKGKKKEEDESAGERS 112
>12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569
Length = 411
Score = 31.9 bits (69), Expect = 0.67
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = -3
Query: 839 REARPGAPAETTSPQHQTVLLLENEADHVKIRTVLEEDLQYSDSGSSELEEVEQKDIVDT 660
RE R G AETT P+ + L+E +A ++ + QY ++ L + E+ V
Sbjct: 119 REDREGYRAETTEPRMYSRSLIEKQASQFYTTSMFADKFQYEIYEATGL-DAEKTQEVPN 177
Query: 659 IQLCVKPED 633
I V P D
Sbjct: 178 IMYNVMPSD 186
>09_01_0027 -
469856-470773,470780-471261,471296-471408,471453-472003,
472089-472328
Length = 767
Score = 31.5 bits (68), Expect = 0.89
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = -3
Query: 743 TVLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIKREV 564
TV E ++Q+ S SE+EEV + T KPE D+PS DP TTI ++
Sbjct: 572 TVAEPEVQFVASVGSEIEEVPGLEWDGT-----KPE--IFDDPSPAKDPEVQETTIPKKA 624
Query: 563 TDDLPPP 543
T P
Sbjct: 625 TTSSEVP 631
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNHKPSTSDGATPRKR 766
PPPP R A G +G P + A P+K+
Sbjct: 11 PPPPPPRQLAAGKKGKASPKAAKRAAPKKQ 40
>02_05_1175 - 34706870-34707616
Length = 248
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 834 SAAGGARGNHKPSTSDGATPRKRGRPRKDQNSFGR 730
++AGG G PS+S + R + R+D N+FG+
Sbjct: 60 TSAGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQ 94
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = -3
Query: 743 TVLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIKRE 567
++L +Y S S+L E+E+K+ +L +P+DT DE ++ P + +KRE
Sbjct: 267 SILIRAREYVKSLESKLSELEEKNRELEARLSTRPDDTKNDEEE-VAAPPEAGGEVKRE 324
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 30.3 bits (65), Expect = 2.0
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Frame = -3
Query: 773 ENEADHVKIRTVLEEDLQYSDSGSSELEEVEQKDI--VDTIQLCVKPE---DTTLDEPSM 609
E + D V + T +E D D E+E +D VD+ + +PE D ++ P
Sbjct: 162 ERQDDDVAVETEVELDDDDDDEDELSSLELEYEDWINVDSSESEPEPEPPRDVAVETPVA 221
Query: 608 ISDPSDFPTTIKRE----VTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMV 450
+ + + E V + PPP VD++ D F +E P+E + +V
Sbjct: 222 VEEEVAVEEEVAVETPVAVEEPPPPPPPSVVDIE--CDVVFEPAYRELPVETPIEVV 276
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 677 SVPPLPIPNYHCPSIEDLLPKLF*SLRGLPRFLGVAPSDVEGLWFPRAPPAALLVRGGGG 856
+ PP P ++ +I L LF S PR A ++ LW R+ A + GGGG
Sbjct: 115 AAPPSPASSHRHQAIAGGLSCLFSSPTAAPR-AAAAQDELGALWHDRSGEATAVGGGGGG 173
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNH 805
PPPP +R +GG GNH
Sbjct: 23 PPPPSSRKGSGGVGGNH 39
>01_06_1259 - 35810926-35811777
Length = 283
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 777 PRKRGRPRKDQNSFGRRSSIL 715
PRKRGRPRKD + R+ + +
Sbjct: 194 PRKRGRPRKDATMYPRKDATI 214
>12_02_0442 - 19118536-19119222
Length = 228
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNHKPSTSDGATPRKRGRPRKDQNSFGRRSSILGQW 706
PPPP A G G + +T+ A + G P D+ + SS W
Sbjct: 53 PPPPLLPGADGREEGRRRGTTAVVAPAARSGEPATDKLATPSASSSASSW 102
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNHKPSTSDGATPRKRGRPRKDQNSFGR 730
PPPP +A S +DG +RGR + + + GR
Sbjct: 136 PPPPLPAAATAAPHRRQSSSAADGELAAERGREKPSRAAEGR 177
>08_02_1281 - 25849918-25851099
Length = 393
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 674 LSVPPLPIPNYHCPSIEDLLPKLF*SLR-GLPRFLGVA-PSDVEGLWFPRAPP 826
L +PP P+P+ PS LLP+L R P A P +G + PRA P
Sbjct: 4 LLLPPWPLPSPASPSARLLLPELHSPARLAFPSSPSAARPPRRDGAYCPRAAP 56
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -2
Query: 852 PPPRTRSAAGGARGNHKPSTSDGATPRKRGRPRKDQNSFGR 730
PP R AAGG RG+ + G R RGR + FGR
Sbjct: 43 PPSRPPPAAGGGRGSSRGGRGGG---RGRGRSLTNGAGFGR 80
>04_04_1637 -
34957626-34957883,34958271-34958420,34958522-34958686,
34958819-34958889,34959265-34959691
Length = 356
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Frame = -2
Query: 855 PPPP---RTRSAAGGARGNHKPSTSDGATP-----RKRGRPRK 751
PPPP + ++ + G P+ ATP RKRGRPRK
Sbjct: 29 PPPPLMHNSMASVSASAGAGSPTVPPSATPMEPVKRKRGRPRK 71
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -2
Query: 855 PPPPRTRSAAGGARG---NHKPSTSDGATPRKRGRP 757
PPPP SA GG G + KPS AT KR P
Sbjct: 67 PPPPNQPSAGGGGGGLEASAKPSLLVKATQLKRAAP 102
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 25.0 bits (52), Expect(2) = 4.2
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 835 KRGRGRPRKPQAL 797
KRGRGRPRK + L
Sbjct: 331 KRGRGRPRKDKPL 343
Score = 22.6 bits (46), Expect(2) = 4.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 847 PTDEKRGRGRPRK 809
P+ KRG GRPRK
Sbjct: 299 PSGFKRGPGRPRK 311
>11_06_0123 +
20334350-20334553,20335059-20335490,20336052-20336191,
20336281-20336401,20337110-20337250,20337421-20337663
Length = 426
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 737 LEEDLQYSDSGSSELEEVEQK-DIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIKREVT 561
L + + ++DS SS+ EE + ++ D K E T ++ +SD P+ E T
Sbjct: 91 LNKKITFADSDSSDDEEEDHSGEVTDDTNNADKGETTPSEQQKEVSDTPVVPSKDNEEQT 150
Query: 560 DD 555
D+
Sbjct: 151 DN 152
>09_04_0041 - 14051870-14052430,14052509-14052562
Length = 204
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNHKPSTSDGATPRKRGRPRKDQN 742
PP P+ +AA A P+ ++PR RGRP K ++
Sbjct: 95 PPKPKDAAAAAAAPAP-APAAPAASSPRPRGRPPKPKD 131
>11_03_0190 -
11350497-11350832,11351926-11352303,11353897-11354181,
11354515-11355327
Length = 603
Score = 28.7 bits (61), Expect = 6.2
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Frame = -3
Query: 836 EARPGAPAETTSPQHQTVLLLENEADHVKIRTVLEE----DLQYSDSGS-SELEEVEQKD 672
E AP P V+L V+ L + DL S S S EEV
Sbjct: 106 EGEGAAPVVDGHPSQVLVVLAATSRHFVEAAMGLADWFGKDLPPSSSAPPSPFEEVHGAA 165
Query: 671 IVDTIQLCVKPE-DTTLDEPSMISDPSDFPTTIK--REV 564
+ D + PE D+ +E D SDFPT ++ REV
Sbjct: 166 LFDESMANLDPESDSMFNEALAAHDHSDFPTVLRECREV 204
>06_01_0066 - 554637-555548
Length = 303
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 627 AGRAEHDIGSVRFPDDDQTRSD 562
AGR+ H IGS FPD Q R D
Sbjct: 116 AGRSNHQIGSFLFPDWPQHRLD 137
>04_04_0885 - 29086426-29086767
Length = 113
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNHKPSTSDGATP 775
P P TR AA AR +H+ ++ GATP
Sbjct: 75 PRPTATRLAAVAARDDHRVVSAGGATP 101
>04_04_0027 +
22232781-22233051,22234256-22234329,22234471-22234638,
22234812-22234971,22235062-22235145,22235781-22236078,
22236158-22236364,22236465-22236735,22236971-22237055,
22237141-22237182,22237302-22237350,22237825-22237894,
22238314-22238463,22238592-22238619,22238856-22238990,
22240693-22241469,22242133-22242192,22242367-22242413
Length = 991
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 782 LLLENEADHVKIRTVLEEDLQYSDSGSSELEEVEQKDIVDT 660
L LE E HV + V E++ SD+GS L+ + +DT
Sbjct: 163 LELEFEEKHVFVSDVYGEEIDDSDTGSDSLQGSDDDAFLDT 203
>03_04_0015 + 16453138-16453356,16453446-16453970
Length = 247
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 776 LENEADHVKIRTVLEEDLQYSDSGSSELEEVEQKDIVD 663
LE E D V + L+E +Q S S ++E+E ++++VD
Sbjct: 62 LEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRREVVD 99
>12_02_0240 -
16174724-16174927,16175005-16175097,16175199-16175258,
16175708-16175789,16175873-16176075,16176222-16177226,
16177371-16177643
Length = 639
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = -3
Query: 743 TVLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIKREV 564
TV E ++Q+ S SELEEV + T E + PS + DP TT+ +
Sbjct: 349 TVAEPEVQFVASVGSELEEVPGLEWDST-------EPKIFEAPSPVKDPEVQETTVPEKA 401
Query: 563 TDDLPPP 543
T P
Sbjct: 402 TTSSEVP 408
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -3
Query: 626 LDEPSMISDPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 462
+D M + P + V +LPPP DDF D D F E+ + D
Sbjct: 171 MDAAKMAPFAAAAPIKDPKSVKFNLPPPEDDFGDDGSEFDDEFDEFDDEDDFDDD 225
>02_03_0273 +
17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 855 PPPPRTRSAAGGARGNHKPST 793
PPPP +AAGG H PS+
Sbjct: 16 PPPPPPHAAAGGGGDAHTPSS 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,169,550
Number of Sequences: 37544
Number of extensions: 544781
Number of successful extensions: 2540
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2526
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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