Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f06
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.62 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   3.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   7.7  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    26   7.7  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 647 VRRGEQRLSFCSRFRATTMPNAEP 576
           VR  EQ++SF SR+ A    NAEP
Sbjct: 39  VRLSEQKISFLSRYHANEGKNAEP 62


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
 Frame = +3

Query: 333 GELVP--SDSRSGCRRDSIYEASNLNQSCTIALRTR---------VHPVVPQDILEVPLQ 479
           G+ +P  +D  +     ++    NLNQ   + + T          VHPV+   +   PLQ
Sbjct: 441 GQTLPENTDDTNSNATSAVPNLQNLNQQNAVTMGTNTPNNGSSPAVHPVIHIYLSRPPLQ 500

Query: 480 VMAGESAAPTSAVGR 524
               E   P+ AV R
Sbjct: 501 PAVSEQETPSEAVSR 515


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 139 CKKTSLWRPAMFFATLRATQVREAIHAGATALREHVV 249
           C   +LW    FF  L+A      I    T LR+HVV
Sbjct: 670 CTVMNLWVQKYFFEDLKARNTLYLISEMRTFLRDHVV 706


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 434 SSPSGAAGHSRGTTPSN 484
           S+PS A G SRG+TP++
Sbjct: 284 STPSAAVGSSRGSTPAS 300


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 522 APRPTSAPQTHQPLLGVVPRECPAAP 445
           AP    AP  HQP    V  E P+AP
Sbjct: 520 APVVPEAPSVHQPPAAPVAPEVPSAP 545


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 321 PIANQIDGPVRMLEQYLQCTPPPQYDVFPQRCSS 220
           P+ ++I G ++ ++QY+     P YD +  + S+
Sbjct: 101 PVFSRISGEIKAIDQYVDKELSPMYDNYVNKPSN 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,599,815
Number of Sequences: 5004
Number of extensions: 80648
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)