Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f06
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    37   0.021
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    34   0.15 
AF106579-5|AAC78198.1|  174|Caenorhabditis elegans Hypothetical ...    30   1.8  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    30   2.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    29   4.1  
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z83105-10|CAB05484.1|  499|Caenorhabditis elegans Hypothetical p...    29   5.5  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    28   7.2  
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    28   7.2  
Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   9.5  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
 Frame = -3

Query: 423  VQSCKTDSDCWPRI-CCPDGTRSYCRTAR-ARLDLVPIANQIDGPVRMLEQYLQCTPPPQ 250
            +Q CKTDSDC     CC +G    C T+  +R+   P   Q   P     + L   P   
Sbjct: 1039 IQECKTDSDCGQTSKCCWNGCGLTCVTSSISRIVPTPSIQQ-TMPGTHFGECLNVAPLGA 1097

Query: 249  YDVFPQR-----CSSSVDCFPNL--CCAEGGKKHCRPPQRSLLAL 136
            + +  QR     C +  DC P+L  CC++G    C  P R+ L +
Sbjct: 1098 FCL--QRPTIADCKNDDDC-PSLYKCCSDGCVMRCTQPHRAPLCI 1139


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
 Frame = -3

Query: 414  CKTDSDCWPRIC-CPDG---TRSYCR-TARARLDLVPIANQIDGPVRMLEQYLQCTPPPQ 250
            C+  S C   IC C  G       C  T   R  ++P+   I   +  L     C P   
Sbjct: 1791 CRGGSSCNQNICQCAVGFSVDNGRCTPTIEVRFTMLPVTTAIPVFIIELNPGQTCDPSCA 1850

Query: 249  YDVFPQRCSSSVDCFPNLC-CAEGG---KKHCRP--PQRSLLALLAGVTQRVGSTIVNFR 88
            Y    QRCS    C  ++C C +G       C P  PQ     L    T R G +  N  
Sbjct: 1851 YQPCMQRCSGGSSCSNSICSCPQGSGVLNNVCSPSFPQNDNYNLTR--TARPGDSCDNTI 1908

Query: 87   QSQANANXCVNTC 49
                 ++  + TC
Sbjct: 1909 VCIGGSSCLIGTC 1921


>AF106579-5|AAC78198.1|  174|Caenorhabditis elegans Hypothetical
           protein F54E2.2 protein.
          Length = 174

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
 Frame = -3

Query: 540 CVKGVPAPRPT-----SAPQTHQPLLGVVPRECPAAPLGELLFEVQSCKTDSDCWPRICC 376
           CVK    P  T     S  +   P+ G  P          +   +  C TD DC  + CC
Sbjct: 105 CVKSAKCPSGTVCLDFSTQRCCHPMPGTCPTPTQLGYKCMVYTPISWCTTDQDCKGKKCC 164

Query: 375 PDG 367
           P G
Sbjct: 165 PTG 167


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 2/142 (1%)
 Frame = -3

Query: 585 CRASSGPDQVCCDKRCVKGVPAPRPTSAPQTHQPLLGVVPRECPAAPLGELLFEVQSCKT 406
           C   S P    C   C +  P      APQ +QP      ++C A+       + Q C+ 
Sbjct: 404 CHQPSAPQCQQCQNTCQQFAPVCEQQCAPQCYQPSAPQC-QQCQAS-----CQQTQQCQ- 456

Query: 405 DSDCWPRICCPDGTRSYCRTARARLDLVPIANQIDGPV--RMLEQYLQCTPPPQYDVFPQ 232
              C P+  C   +   C+  ++      +A Q+   +    + Q  QC P  Q     Q
Sbjct: 457 -QQCIPQ--CQQPSAPQCQQCQSACQFPVVAPQVVAVILEASVSQSAQCEPQCQQSC-QQ 512

Query: 231 RCSSSVDCFPNLCCAEGGKKHC 166
           +C   +   P   CA    + C
Sbjct: 513 QCIQQLQ--PIQQCATACTQSC 532


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -3

Query: 525  PAPRPTSAPQTHQPLLGVVPRECP 454
            PAP PTSAPQ  +PL  V P   P
Sbjct: 1750 PAPAPTSAPQIVEPLPPVQPLPQP 1773


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = -3

Query: 690 NVDYSSAGKTQKLVCPKRGTAPVILFPIPCDNNAQCRASSGPD-QVCCDKRCVKGVPAP- 517
           N+   +A  TQ++      T   +  P   +N     A+  P  Q  CD  C    PAP 
Sbjct: 224 NICQQTAQATQQVYNQNSNTNTQMYNPYNNNNQGSGSANCAPACQPACDNSCTSQTPAPM 283

Query: 516 -----RPTSAPQTHQPLLGVV 469
                  TSAP + Q ++ +V
Sbjct: 284 YNPYDASTSAPASSQAVIQIV 304


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = -3

Query: 675 SAGKTQKLVCPKRGTAPVIL-FPIPCDNNAQCRASSGPDQVCCD-KRCVKGVPAPRPTSA 502
           +A   Q+L  P    AP     P+ C           P QV    +   +G PAP P   
Sbjct: 57  AAAPPQQLEQPTPAPAPESAPAPVQCPEPTP-EVPQQPTQVSAPVQEITQGAPAPIPEPT 115

Query: 501 PQTHQPLLGVVPRECPAAPLG 439
           P T +    V P   P  P+G
Sbjct: 116 PVTAEQPTPVDPLSSPIKPIG 136


>Z83105-10|CAB05484.1|  499|Caenorhabditis elegans Hypothetical
           protein F14H3.10 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 272 YNVHRHLNTTCSLNAVAPAWIASRTCVARRVAKN 171
           +NV ++L     L  V P  I  R+CV  ++AK+
Sbjct: 419 FNVEKYLKNPKLLQQVIPFGIGKRSCVGEQIAKS 452


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = -3

Query: 612 PIPCDNNAQCRASSGPDQVCCDKRCVKGVPAPRPTSAPQTHQPLLGVVPRECP 454
           P P    A C A+  P   CC        PAP   SAP+      G  P ECP
Sbjct: 154 PPPPSAPACCVAAPVPTNPCCQPA---PRPAPCVCSAPRPVPCRCGAPPMECP 203


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
 Frame = +2

Query: 368 PSGQHIRGQQSESVLHDCTSNKSSPSGAAG-HSRGTTPSNGW*VCGADVGRGAGTPLTQR 544
           P  Q  RGQ S+S   D    +  P G  G   RG  P  G    G    RG G     R
Sbjct: 559 PGSQGGRGQDSDSGSQDAFPGRRGPGGPGGLGGRGQGPDFG---PGGQGDRGQGPDFGAR 615

Query: 545 LSQQTWSGP 571
                  GP
Sbjct: 616 SQGNRGQGP 624


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 588 QCRASSGPDQVCCDKRCVKGVPAPRPTSAPQTHQP 484
           QC  SS P    C   C +  P  +   APQ  QP
Sbjct: 195 QCTISSAPQCQQCQTTCQQFAPVCQQQCAPQCQQP 229


>Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical
           protein C56A3.3 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 225 SSSVDCFPNLCCAEGGKKHCRPPQRSLLALLAGVTQRVGSTIVNFRQSQANANXCVN 55
           +++VDCF N+C A+  K +C   +   + +   V   + +++   R  Q N   C N
Sbjct: 128 AAAVDCFVNVCWAKQAKHYCTVRRAKQICISIVVVSIMYNSL---RFPQFNLRKCFN 181


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 5/143 (3%)
 Frame = -3

Query: 603 CDNNAQCRASSGPDQVCCDKRCVKGVPAPR-PTSAPQTHQPLLGVVPR-ECPAAPLGELL 430
           C + A C  SS    +CC  + V   P  R P + P T+  +   + R +CP        
Sbjct: 554 CPSGASCVKSSTNQSICC--KAVTACPDNRIPYNIPGTNSVVACSIERDDCPD------- 604

Query: 429 FEVQSCKTDSDCWPRICCPDGTRSYCRTARARLDLVPIANQIDGPVRMLEQYLQCTP-PP 253
            + Q  ++ +     +CC     S  R  R    + P+  +   P    +     +P PP
Sbjct: 605 -DFQCLESATAPGFHMCCSGPLPSAQRPVRPIAPVAPMPRRPFEPDSFADLLSNISPCPP 663

Query: 252 QYDVFPQRCSSSV--DCFPNLCC 190
           Q     Q C+ +   DC  N  C
Sbjct: 664 QLFSSGQSCTVNQVGDCPKNHIC 686


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 267  CTPPPQYDVFPQRCSSSVDCFPN-LCCAEGGKKHCRP 160
            CT       F + CS   DC  N +C A  GK  C+P
Sbjct: 1283 CTELCPDGTFGESCSQKCDCGENSMCDAISGKCFCKP 1319


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 267  CTPPPQYDVFPQRCSSSVDCFPN-LCCAEGGKKHCRP 160
            CT       F + CS   DC  N +C A  GK  C+P
Sbjct: 1283 CTELCPDGTFGESCSQKCDCGENSMCDAISGKCFCKP 1319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,645,348
Number of Sequences: 27780
Number of extensions: 498793
Number of successful extensions: 1685
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)