Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f04
(224 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 0.44
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 1.8
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 23 4.1
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 23 4.1
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 23 4.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 23 4.1
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 23 4.1
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 23 5.4
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 23 5.4
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 23 7.2
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 22 9.5
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 22 9.5
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 22 9.5
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 22 9.5
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 0.44
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 12 ITLIISIQNNLPVSPINILHYFYPIF 89
+ ++ ++N +SPI +L F+P+F
Sbjct: 102 VLCLVLLKNKTVISPITLLQCFFPLF 127
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 77 LPYFRLVLLHVYLGSILLNN 136
LPY L + H+ LG+ILL N
Sbjct: 442 LPYLFLGMQHMQLGNILLAN 461
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 30 IQNNLPVSPINILHYF 77
+ NNL VS +N LH F
Sbjct: 26 VSNNLVVSKVNSLHLF 41
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 15 TLIISIQNNLPVSPINIL 68
TL+ S+Q+N PV+P+ L
Sbjct: 143 TLLNSMQSNAPVTPMRFL 160
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 82 LFSTCVIACLFRINI 126
LFS+ V+ACL + N+
Sbjct: 222 LFSSIVVACLIQFNV 236
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 3 NSWITLIISIQNNLPVSPINILHYFYPIFDLC--YC 104
N ++ I++ N + P + YFY + DLC YC
Sbjct: 313 NDLLSAILNT-NKYTLRPDDCAPYFYRLMDLCLRYC 347
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 103 ACLFRINITKQFVN*WAVLNKFKKF 177
AC+ + TK+F W V N F KF
Sbjct: 303 ACIKAFSRTKEFTKAWEVFN-FMKF 326
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 23.0 bits (47), Expect = 5.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 176 NFLNLFKTAH*FTNCLVILILNKHAITQVENRVKIM 69
NF F T H T CL+I L H I Q ++ V +
Sbjct: 18 NFYTTFLTPHKLTLCLLI-ELYAHRIIQPQHCVPFL 52
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 150 PLVHKLFSNIDPK*TCNNTSRK*GKNNVKYLLVT 49
P++ K S I P N TS + NNV++ L++
Sbjct: 231 PIISKHISLIVPTKKVNTTSAQTSLNNVEHDLIS 264
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 60 NILHYFYPIFDLC 98
N+ H F+PI LC
Sbjct: 151 NLFHEFFPILKLC 163
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 110 YLGSILLNNL*TNGQF*INLRNF 178
YLG+ L N +NG IN NF
Sbjct: 307 YLGTTLNNGASSNGSCVINYDNF 329
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 30 IQNNLPVSPINILHYF 77
+Q NLP+ IN ++YF
Sbjct: 154 MQTNLPLQRINEVYYF 169
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 22.2 bits (45), Expect = 9.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 53 TNKYF-TLFLPYFRLVLLHVYLGSILLNNL*TNGQF*INLRNFKSYIK 193
TN F T+F FR VLL + L +L + I++R S++K
Sbjct: 619 TNLVFATMFRTIFREVLLDGIASEVYLKSLKKHAISQISVRAHHSWVK 666
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 192 LIYDLKFLKFI*NCPLVHKLFSNIDPK 112
+I DLKF+ N L+H+ N PK
Sbjct: 609 MITDLKFIGSSENAELIHQRLRNGLPK 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,547
Number of Sequences: 5004
Number of extensions: 13574
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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