Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f04
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    26   3.6  
02_03_0357 + 18075171-18077240                                         25   6.2  

>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 36  NNLPVSPINILHYFYPIFDLCYCMFI 113
           +NLP+  I I+    P+F L  C+F+
Sbjct: 184 SNLPIHVIYIIFSALPLFQLISCIFV 209


>02_03_0357 + 18075171-18077240
          Length = 689

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 81  GKNNVKYLLVTPEDYFESKLS 19
           G+N+ KY+  TPED  ES+LS
Sbjct: 653 GRNSGKYIKYTPED-LESQLS 672


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,234,128
Number of Sequences: 37544
Number of extensions: 59947
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)