Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f04
         (224 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine re...    28   0.78 
AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm rec...    27   1.4  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    26   3.1  
AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm rece...    26   4.1  
Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U56964-1|AAB54033.2|  555|Caenorhabditis elegans Twik family of ...    25   5.5  
AF083645-1|AAC32856.1|  555|Caenorhabditis elegans potassium cha...    25   5.5  
AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm rec...    25   5.5  
AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical ...    25   5.5  
AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm rece...    25   7.2  
Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AC024882-3|AAF60934.1|  340|Caenorhabditis elegans Seven tm rece...    25   9.6  

>AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein143 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 21  IISIQNNLPVSPINILHYFYPIFDLCYCMFI*DQYY 128
           +I I+  L  S INI+  F  IFD+C  +F   Q Y
Sbjct: 56  LILIRKPLRSSSINIIMAFISIFDICSMLFRMKQSY 91


>AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 83 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 75  FYPIFDLCYCMFI*DQYY*TICELMGSFK*I*EILSHI 188
           FYPIFD     FI   YY  + +L G  K   +I S I
Sbjct: 295 FYPIFDAIATTFIIKDYYRGVLKLFGLAKQTPDISSTI 332


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 21  IISIQNNLPVSPINILHYFYPIFDLCYCMFI*DQYY 128
           +I I   L  S INI+  F  IFD+C   +   Q Y
Sbjct: 56  LILIHKPLRSSSINIIMAFIAIFDICSMFYKMKQVY 91


>AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 170 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 51  SPINILHYFYPIFDLCYCMFI*DQY 125
           +PI +++  YP  D   C+F  D Y
Sbjct: 288 APITVIYAVYPALDPLPCLFFVDNY 312


>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 66  LHYFYPIFDLCYCMFI 113
           +H+FY I  + YC+F+
Sbjct: 62  VHHFYKIVKISYCLFV 77


>U56964-1|AAB54033.2|  555|Caenorhabditis elegans Twik family of
           potassium channelsprotein 16 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  KYFTLFLPYFRLVLLHVYLGSILLNNL*TN 148
           K FTL      LVLL+ +LG  + + + TN
Sbjct: 21  KPFTLHCSLLMLVLLYSFLGGFIFDRIETN 50


>AF083645-1|AAC32856.1|  555|Caenorhabditis elegans potassium
           channel subunit n2P16 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  KYFTLFLPYFRLVLLHVYLGSILLNNL*TN 148
           K FTL      LVLL+ +LG  + + + TN
Sbjct: 21  KPFTLHCSLLMLVLLYSFLGGFIFDRIETN 50


>AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm
           receptor protein 82 protein.
          Length = 362

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 75  FYPIFDLCYCMFI*DQYY*TICELMG 152
           FYPIFD     F+   YY  I  + G
Sbjct: 295 FYPIFDALATTFVIKDYYRGIMRIFG 320


>AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical
           protein C08E3.8 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 120 DPK*TCNNTSRK*GKNNVKYLLVTPEDYFE 31
           +P  TC    R   ++N K   VT EDY E
Sbjct: 152 EPTCTCGRRIRTSDEDNRKEFFVTDEDYIE 181


>AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 156 protein.
          Length = 344

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  PINILHYFYPIFDLCYCMFI*DQYY*TICELMGSFK*I*EIL 179
           P++IL   + + D    +F+ D+Y   + E  G F  + E++
Sbjct: 287 PLSILFSIFSVMDSIRIIFLVDEYRNALFEFFGGFCCVNEVV 328


>Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical
           protein R04F11.4 protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 53  TNKYFTLFLPYFRLVLLHV 109
           T ++F L LP+F LVLL +
Sbjct: 48  TKRWFRLALPHFGLVLLSI 66


>AC024882-3|AAF60934.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 155 protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  PINILHYFYPIFDLCYCMFI*DQYY*TICELMGSFK*I*EIL 179
           P++IL   + + D    +F+ D+Y   + E  G F  + E++
Sbjct: 287 PLSILFSMFSVMDSIPIIFLVDEYRNALFEFFGGFCCVNEVV 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,257,850
Number of Sequences: 27780
Number of extensions: 70666
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)