Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f03
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 68 2e-12
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 67 3e-12
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 65 1e-11
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 61 2e-10
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 44 4e-05
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 39 8e-04
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 29 0.65
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.5
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 3.5
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 27 4.6
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 4.6
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 26 6.0
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 8.0
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 67.7 bits (158), Expect = 2e-12
Identities = 47/148 (31%), Positives = 67/148 (45%)
Frame = -1
Query: 499 LGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGC 320
LG + + LF + P+T + F L G+ G GY G+ F +P GGD+ +G G
Sbjct: 40 LGRVTIGLFGKTVPKTAENFRALATGEK-GFGYEGSIFHRVIPNFMIQGGDITKGDGTGG 98
Query: 319 YAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVI 140
+ G R P EN+ SH PGLLSM D F IT P D +VVFG V+
Sbjct: 99 KSIYGSRFP--DENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVL 156
Query: 139 LPCETFEVIRGLGAPLSSRPVVEISAAK 56
+ + I +P+ ++ K
Sbjct: 157 SGYDIVKKISKAETDNRDKPLEDVKIIK 184
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 67.3 bits (157), Expect = 3e-12
Identities = 45/140 (32%), Positives = 64/140 (45%)
Frame = -1
Query: 517 VREGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIH 338
+ G LG + LF + P+T F L G+ G+GY G+ F +P GGD
Sbjct: 9 IANGQPLGRIVFKLFDDVVPKTAANFRALCTGEK-GYGYAGSTFHRVIPQFMLQGGDFTR 67
Query: 337 DNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNV 158
NG G + G + P EN+ H+ PGLLSM + F IT P D ++V
Sbjct: 68 GNGTGGKSIYGEKFP--DENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHV 125
Query: 157 VFGRVILPCETFEVIRGLGA 98
VFG V + + + LG+
Sbjct: 126 VFGEVTEGMDVVKKVESLGS 145
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 65.3 bits (152), Expect = 1e-11
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Frame = -1
Query: 511 EGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGH-----GYVGTKFFTKVPGLYWSGGD 347
+G +LG + + LF+ P+T + F G+ LG GY + F + G GGD
Sbjct: 14 DGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGD 73
Query: 346 VIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSM-RVTKDDEMCGIFNITFKPLPQFD 170
+ +G G RT EN+ H PGLLSM KD C F IT P D
Sbjct: 74 FVSGDGTGSATIFNSRT-FPDENFTLKHDRPGLLSMANAGKDSNGCQFF-ITTVPCDFLD 131
Query: 169 LRNVVFGRVILPCETFEVIRGLGAPLSSRP 80
++VVFG VI + + I +SRP
Sbjct: 132 GKHVVFGEVIEGYDIVKEIESTPVGANSRP 161
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 61.3 bits (142), Expect = 2e-10
Identities = 49/162 (30%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
Frame = -1
Query: 544 ATKVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQG---DGLGHGYVGTKFFTKV 374
+T Y + + +G + + LF P+T K F L G DG Y G++F +
Sbjct: 2 STYAYFKISI-DGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVI 60
Query: 373 PGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNIT 194
GGD NG G + G + EN+ H P LLSM + F IT
Sbjct: 61 KNFMLQGGDFTRGNGTGGESIYGEK--FEDENFELKHDKPFLLSMANAGPNTNGSQFFIT 118
Query: 193 FKPLPQFDLRNVVFGRVILPCETFEVIRGLGAPLSSRPVVEI 68
P P D ++VVFG+VI T I L + PVV +
Sbjct: 119 TVPTPHLDGKHVVFGKVIQGKSTVRTIENLETK-NDDPVVPV 159
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 43.6 bits (98), Expect = 4e-05
Identities = 38/148 (25%), Positives = 60/148 (40%)
Frame = -1
Query: 499 LGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGC 320
LG + + L+ E P+TC+ F L + +G Y G F +P GGD G
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLAK-EGY---YDGVIFHRVIPDFVIQGGDPTGTGRGGT 65
Query: 319 YAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVI 140
+ + H H+ G+LSM + F IT P P D ++ +FGRV+
Sbjct: 66 SIYGDKFDDEIHSDLH--HTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVV 123
Query: 139 LPCETFEVIRGLGAPLSSRPVVEISAAK 56
+ + + S RP+ + K
Sbjct: 124 SGLSVCKRMGLIRTDSSDRPIEPLKIIK 151
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 39.1 bits (87), Expect = 8e-04
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 4/165 (2%)
Frame = -1
Query: 496 GVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCY 317
G + + L+ + P+ C+ FI L L Y GT VP GGD G G
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLC----LEGYYDGTIVHRVVPEFLIQGGD---PTGTGMG 74
Query: 316 AQRGRRTPIGAENYHYSHSLP-GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVI 140
+ P E + + GL+ M T+++ F IT P P+++ + +FGRV+
Sbjct: 75 GESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
Query: 139 LPCETFEVIR--GLGAPLSSRPVVEISAAKHRV-DNRWVYGKPNS 14
+ V+R L + RPV V DN + KP S
Sbjct: 135 -GDTIYNVVRISELELDANQRPVFPPKIISTEVIDNYFTDIKPRS 178
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 29.5 bits (63), Expect = 0.65
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 556 QRTEATKVYITLRVREGAVLGVLPVVLFAECCPQT---CKLFIDLLQGDGLGH 407
+R++ Y L+++E +V G V LF P CKL LL+GD + H
Sbjct: 4 KRSDYASAY--LKIKEASVSGGCTVQLFVALDPDALCACKLLSTLLKGDFISH 54
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 681 LGYRPRLNLLRTGRLSIVKLKRIRQCCILMGPL-RRTTLTFLHSELKLP 538
L Y P + + I++ KR+R+ C L G L R + + ELKLP
Sbjct: 473 LRYSPMYLYKKQAWMQIIEKKRVREFCDLFGSLVCRHSKQDVEEELKLP 521
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 769 PKRHDARSHYFKEIRKDNLQL-YKRIVKAKARVQTTAELIEDWKTKHREIEKDTT 608
P D RS Y ++ + KR+V+ + ++++L ED+K RE+++ T
Sbjct: 210 PNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNT 264
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 829 KRQHFLRGKVDCNWLKLPVRPKRHDARS 746
K + L G+VDC W K P K D S
Sbjct: 191 KSKLILAGEVDCIWDKKPCSAKESDVHS 218
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -1
Query: 283 ENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVV 155
E Y YS LP + + K E CG I K LR ++
Sbjct: 79 EKYSYSSPLPSSVEFKSGKQVEFCGFEKIQSKQRDLKSLRVII 121
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 293 GRPSSPLGVTAEAIVVYHVSSTPVQTWDLREKFRPNVSMT*PISL 427
G+ S +G+ + ++ H+S + + D +K PN ++T ISL
Sbjct: 112 GKTYSVVGLRGQPGIIPHISESIFEEIDKLKKKSPNTTITVSISL 156
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 259 ENVSSDSSRLRWASVFPFGRNSRSHCRV 342
+ V D +R+ FP+ RN++S+C V
Sbjct: 94 QKVIVDHPPVRYRVTFPWNRNAKSYCLV 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,694
Number of Sequences: 5004
Number of extensions: 75547
Number of successful extensions: 219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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