Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f03
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 73 4e-13
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 58 7e-09
02_01_0160 + 1116160-1116678 58 7e-09
10_01_0309 + 3417602-3418147 54 1e-07
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 53 3e-07
09_06_0359 + 22508900-22509439 51 1e-06
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 49 4e-06
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 48 7e-06
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 48 1e-05
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 44 2e-04
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 43 4e-04
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 41 0.001
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 41 0.001
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 38 0.014
06_01_0214 + 1634171-1634173,1634263-1634742 37 0.018
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 36 0.055
04_04_0266 - 24043482-24043778,24043974-24044074,24044154-240443... 30 2.1
12_02_1040 + 25616967-25617276,25618042-25618163,25618397-256186... 29 3.6
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 4.8
11_04_0027 - 12453488-12453547,12454972-12455673,12455907-124559... 29 6.4
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 28 8.4
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 28 8.4
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 28 8.4
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 72.5 bits (170), Expect = 4e-13
Identities = 50/140 (35%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Frame = -1
Query: 541 TKVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGD-GLGHG-----YVGTKFFT 380
TKV+ + + G G + + LF P+T + F + G+ GLG Y GT F
Sbjct: 40 TKVFFDITIN-GKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPFHR 98
Query: 379 KVPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFN 200
+PG GGD + NG GC + G P EN+ +HS PGLLSM D F
Sbjct: 99 IIPGFMIQGGDTVSGNGTGCDSIYGGMFP--DENFKINHSAPGLLSMANYAKDTNGSQFF 156
Query: 199 ITFKPLPQFDLRNVVFGRVI 140
IT L + D ++VVFG+V+
Sbjct: 157 ITTVKLTRLDGKHVVFGKVL 176
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 58.4 bits (135), Expect = 7e-09
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 2/168 (1%)
Frame = -1
Query: 577 DHAYISTQRTEATKVYITLRVRE--GAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHG 404
D + Q KVY + + G +G + + L+ + PQT + F L G+ G G
Sbjct: 71 DPKEVDLQSKITNKVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEK-GFG 129
Query: 403 YVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKD 224
Y G+ F + GGD NG G + GR EN+ H+ PG++SM
Sbjct: 130 YKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYGRT--FKDENFKLVHTGPGVVSMANAGP 187
Query: 223 DEMCGIFNITFKPLPQFDLRNVVFGRVILPCETFEVIRGLGAPLSSRP 80
+ F I P D R+VVFG+VI + ++I RP
Sbjct: 188 NTNGSQFFICTVKTPWLDGRHVVFGQVIEGMDIVKMIESQETDRGDRP 235
>02_01_0160 + 1116160-1116678
Length = 172
Score = 58.4 bits (135), Expect = 7e-09
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Frame = -1
Query: 541 TKVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGD-GLGHG-----YVGTKFFT 380
T+V+ + V GA G + + L+A+ P+T + F L G+ G+G Y G+ F
Sbjct: 4 TRVFFDMTVG-GAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHR 62
Query: 379 KVPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFN 200
+P GGD NG G + G + E + + H PG+LSM + F
Sbjct: 63 VIPEFMCQGGDFTRGNGTGGESIYGEK--FADEVFKFKHDSPGILSMANAGPNTNGSQFF 120
Query: 199 ITFKPLPQFDLRNVVFGRVILPCETFEVIRGLGA--PLSSRPVV 74
I P D ++VVFGRV+ + + I +G+ +++PVV
Sbjct: 121 ICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVV 164
>10_01_0309 + 3417602-3418147
Length = 181
Score = 54.0 bits (124), Expect = 1e-07
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Frame = -1
Query: 538 KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHG------YVGTKFFTK 377
+V++ + + G +G + + L A+ P T + F L G+ G Y G+ F
Sbjct: 12 RVFLDIAIG-GEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHRV 70
Query: 376 VPGLYWSGGDVIHDNGFGCY-AQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFN 200
VPG GGD+ NG G A G E + H PG++SM + F
Sbjct: 71 VPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQFF 130
Query: 199 ITFKPLPQFDLRNVVFGRVI 140
IT P D R+V FGRV+
Sbjct: 131 ITVDKAPWLDGRHVAFGRVV 150
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 52.8 bits (121), Expect = 3e-07
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = -1
Query: 550 TEAT-KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGD-GLGHG-----YVGT 392
TE T KVY + + +G G + + LF + P+T + F L G+ G G + G+
Sbjct: 47 TEVTHKVYFDVEI-DGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGS 105
Query: 391 KFFTKVPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMC 212
F +P GGD +G G + G T EN+ H+ PGLLSM D
Sbjct: 106 AFHRIIPSFMIQGGDFTLGDGRGGESIYG--TKFADENFKIKHTGPGLLSMANAGRDTNG 163
Query: 211 GIFNITFKPLPQFDLRNVVFGRVI 140
F IT D ++VVFG+V+
Sbjct: 164 SQFFITTVTTSWLDGKHVVFGKVL 187
>09_06_0359 + 22508900-22509439
Length = 179
Score = 50.8 bits (116), Expect = 1e-06
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Frame = -1
Query: 538 KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGD-GLGHG-----YVGTKFFTK 377
KV+ + + + A G + + LFA+ P+T + F L G+ GLG Y G+ F
Sbjct: 7 KVFFDILIGK-ARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRI 65
Query: 376 VPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNI 197
+P GGD NG G + G R EN+ H+ PG+LSM + F I
Sbjct: 66 IPNFMCQGGDFTRGNGTGGESIYGDR--FADENFKLRHTGPGVLSMANAGPNTNGSQFFI 123
Query: 196 TFKPLPQFDLRNVVFGRVI 140
D ++VVFG+V+
Sbjct: 124 CTTRTTWLDGKHVVFGKVV 142
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = -1
Query: 496 GVLPVVLFAECCPQTCKLFIDLLQGD----GLGHGYVGTKFFTKVPGLYWSGGDVIHDNG 329
G + + LFA+ P+T + F G+ GL GY G +F + GGD + +G
Sbjct: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
Query: 328 FGCYAQRGRRTPIGAENYHYSHSLPGLLSM 239
GC + G T EN+ H+ PGLLSM
Sbjct: 111 TGCTSIYG--TKFDDENFIAKHTGPGLLSM 138
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 48.4 bits (110), Expect = 7e-06
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Frame = -1
Query: 478 LFAECCPQTCKLFIDLLQGD-GLGHG------YVGTKFFTKVPGLYWSGGDVIHDNGFGC 320
LFA+ P+T + F L G+ G+G Y G+ F + G GGD + +G G
Sbjct: 27 LFADVAPRTAENFRALCTGEMGIGQTSKKPLYYKGSLFHRVIKGFMAQGGDFSNGDGSGG 86
Query: 319 YAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVI 140
+ G EN+ H GLLSM + F ITFK + D ++ VFG++I
Sbjct: 87 ESIYGGT--FEDENFVLRHDERGLLSMANAGPNTNGSQFFITFKHNSRLDRKSTVFGKLI 144
Query: 139 LPCETFEVIRGLGA-PLSSRPVVEI 68
L + + I + S PVV +
Sbjct: 145 LGNDVLKRIEYVDVHGAGSTPVVPV 169
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 47.6 bits (108), Expect = 1e-05
Identities = 44/151 (29%), Positives = 60/151 (39%)
Frame = -1
Query: 598 PYGPLAEDHAYISTQRTEATKVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGD 419
P G A+ + Q +K + + V G G + + LF E P+T F L GD
Sbjct: 47 PRGHGADLVGAVELQAKVNSKCFFDVEVG-GEPAGRIVIGLFGEVVPKTVDNFRALCTGD 105
Query: 418 GLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSM 239
G+GY G F + GGD ++NG G + G EN+ H+ PG+LSM
Sbjct: 106 K-GYGYKGCSFHRIIKDFMIQGGDFQNNNGTGGRSIYGE--CFDDENFTLKHTGPGVLSM 162
Query: 238 RVTKDDEMCGIFNITFKPLPQFDLRNVVFGR 146
D F I F N V R
Sbjct: 163 ANAGPDTNGSQFFICTVKFSHFKELNQVLNR 193
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/103 (31%), Positives = 43/103 (41%)
Frame = -1
Query: 376 VPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNI 197
V G GGD+ +G G + G EN+ H G+LSM D F I
Sbjct: 108 VKGFMVQGGDITAGDGTGGESIYGLN--FEDENFVLKHERKGMLSMANAGPDTNGSQFFI 165
Query: 196 TFKPLPQFDLRNVVFGRVILPCETFEVIRGLGAPLSSRPVVEI 68
T P D ++VVFGRVI + + S RP+ +I
Sbjct: 166 TTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDI 208
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 42.7 bits (96), Expect = 4e-04
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 2/182 (1%)
Frame = -1
Query: 595 YGPLAEDHA-YISTQRTEATKVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGD 419
Y P+ ++ Y+ ++ K Y+ L G L + L + P+TC+ F+ +
Sbjct: 324 YDPVTKNELEYVKVEKNPKKKGYVQLHTTHGD----LNLELHCDITPRTCENFLTHCEN- 378
Query: 418 GLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAE-NYHYSHSLPGLLS 242
G+ Y G F + GGD G G + P E N HS G++S
Sbjct: 379 --GY-YNGLIFHRSIKNFMIQGGD---PTGTGSGGESIWGKPFKDELNSKLIHSGRGVVS 432
Query: 241 MRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVILPCETFEVIRGLGAPLSSRPVVEISA 62
M + F I +K P + ++ VFG V+ T + + RP+ EI
Sbjct: 433 MANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGLTTLSAMEKVPVDDDDRPLEEIKI 492
Query: 61 AK 56
K
Sbjct: 493 LK 494
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = -1
Query: 538 KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGD-GLGHG-----YVGTKFFTK 377
+VY+ + + +G +G + + L+ + P+T F L G+ G+GH Y G++F
Sbjct: 39 RVYLDVEI-DGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRI 97
Query: 376 VPGLYWSGGDVIHDNGFG 323
+PG GGD++ +G G
Sbjct: 98 IPGFMIQGGDIVRGDGKG 115
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/86 (32%), Positives = 40/86 (46%)
Frame = -1
Query: 397 GTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRRTPIGAENYHYSHSLPGLLSMRVTKDDE 218
G+ F + G GGD+ +G G + G + EN+ H G+LSM + +
Sbjct: 119 GSCFHRVIKGFMVQGGDITAGDGTGGESIYGLK--FEDENFVLKHERKGMLSMANSGPNT 176
Query: 217 MCGIFNITFKPLPQFDLRNVVFGRVI 140
F IT P D ++VVFGRVI
Sbjct: 177 NGSQFFITTTRTPHLDGKHVVFGRVI 202
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 37.5 bits (83), Expect = 0.014
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Frame = -1
Query: 499 LGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKV-PGLYWSGGDVIHDNGFG 323
+G + ++ + P+TC+ F++L + GY F ++ GGD G G
Sbjct: 18 MGAFTIEMYYKHAPKTCRNFLELSR-----RGYYDNVIFHRIIKDFIVQGGD---PTGTG 69
Query: 322 CYAQRGRRTPIGAE-----NYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNV 158
RG + GA+ H+ G+LSM + F IT P D ++
Sbjct: 70 ----RGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHT 125
Query: 157 VFGRVILPCETFEVIRGLGAPLSSRPVVEI 68
+FGRV E + + + S RP+ E+
Sbjct: 126 IFGRVSKGMEIVKRLGSVQTDKSDRPIHEV 155
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 37.1 bits (82), Expect = 0.018
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Frame = -1
Query: 499 LGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGC 320
LG + +F + P+T + F+ L G+ Y GT F + G GGD G G
Sbjct: 9 LGDIKCEVFCDQAPRTAENFLALCAS---GY-YDGTIFHRNIKGFMIQGGDPT-GTGKGG 63
Query: 319 YAQRGRRTPIGAENYHYS--HSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGR 146
+ G++ A+ + S H+ G++SM + + F IT+ P + VF +
Sbjct: 64 TSIWGKKF---ADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAK 120
Query: 145 VILPCETFEVIRGLGAPLSSRPVVEI 68
VI E +++ RP+ EI
Sbjct: 121 VIHGFEVLDLMEKAQTGPGDRPLAEI 146
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 35.5 bits (78), Expect = 0.055
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Frame = -1
Query: 499 LGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKV-PGLYWSGGDVIHDNGFG 323
+G + + L+ E CP+T + F + +GY F +V G GD + D G G
Sbjct: 504 MGDIHLRLYPEECPKTVENFTTHCR-----NGYYDNLIFHRVIKGFMIQTGDPLGD-GTG 557
Query: 322 CYAQRGRRTPIGAENYHYS--HSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFG 149
+ GR + +H S H P LSM + F IT P D ++ VFG
Sbjct: 558 GQSIWGREFE---DEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 614
Query: 148 RVILPCETFEVIRGLGAPLSSRPVVEI 68
RV+ + + I + + +P ++
Sbjct: 615 RVVKGMDVVQQIEKVKTDKNDKPYQDV 641
>04_04_0266 -
24043482-24043778,24043974-24044074,24044154-24044371,
24044464-24044598,24044695-24044762,24044850-24044991,
24045063-24045473,24045558-24045665,24046223-24046314,
24046462-24046510,24046596-24047024,24047114-24047295
Length = 743
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 405 DTLGRNFSRRSQVCTGVEET*--YTTMASAVTPKGEDGRPSEPRTITTHILFPVF 247
+++ RNF + +C T ++++ SAV ED P EP T HI F
Sbjct: 400 ESIARNFKGNNLICCMSHNTDSIFSSLKSAVARASEDFMPREPTMQTLHIATVAF 454
>12_02_1040 +
25616967-25617276,25618042-25618163,25618397-25618623,
25618708-25618885,25619054-25619197,25619448-25619669
Length = 400
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = -1
Query: 751 RSHYFKEIRKDNLQLYKRIVKAKARVQTTAELIEDWKTKHREIEKDTTMLYP 596
+ H K RK+ LY+ +V+ + + K HR+++ + +L P
Sbjct: 192 KQHLIKHYRKNKKLLYEEVVRLALDLARGLSFLHSKKIVHRDVKSENMLLDP 243
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 766 KRHDARSHYFKEIRKDNLQLYKRIVKAKARVQTTAELIE 650
+ HD F E ++ N QLY++I +A+ ++ E +E
Sbjct: 1398 QEHDQTKKAFSEAQEINQQLYRKIEEAEKNIEQLRENVE 1436
>11_04_0027 -
12453488-12453547,12454972-12455673,12455907-12455940,
12456005-12456125,12456509-12457139
Length = 515
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 365 VLEWRRRDTRQWLRLLRPKGKTDAHRSRELSL 270
+L W RD +W L+RPK K + + R++ L
Sbjct: 259 LLRWLERDEMKWRVLIRPKFKDNDYVPRKIVL 290
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 296 RPSSPLGVTAEAIVVYHVSSTPVQTWDLREKFRPNV 403
+ +SP G +E + + STP+ T++ +K RP++
Sbjct: 195 KKASPSGGKSEMLESFDTPSTPIPTFEYNKKARPSM 230
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 293 GRPSSPLGVTAEAIVVYHVSSTPVQ--TWDLREKFRPNVSMT 412
G SS LGV A+ ++HV TP WD+ + P+ +T
Sbjct: 106 GHLSSSLGVVELAVALHHVFDTPEDKIIWDVGHQAYPHKILT 147
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 253 REENVSSDSSRLRWASVFPFGRNSRSHCRVSRLLHSSTDLGPS 381
RE+N S S+RLR S R S + HSS+D+GPS
Sbjct: 721 REDNGGSSSARLRATS----SRGSWNAAFFGSWRHSSSDIGPS 759
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,444,146
Number of Sequences: 37544
Number of extensions: 527232
Number of successful extensions: 1596
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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