Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f03
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 286 AENYHYSHSLPGLLSMRVTK--DDEMCGIFNIT 194
           ++NY   HS P  L++   K  +D+ C I +IT
Sbjct: 377 SQNYLTVHSFPSTLNIPSVKIDEDQKCSIESIT 409


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 440 KQFASLRTALREQNHREHSQHRSLSHPQRYVHLGSFSSL 556
           + F    +   +Q  ++H Q  S  H       G FSSL
Sbjct: 89  QSFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSL 127


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 744 CDRASCLLGLTGNFNQLQSTLPRKK 818
           C    CLLG+  ++ +  S + RKK
Sbjct: 106 CKCDDCLLGIVDDYQRNPSVVGRKK 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,636
Number of Sequences: 438
Number of extensions: 6214
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)