Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15f02
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...   186   4e-48
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...   130   2e-31
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...   120   3e-28
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    32   0.11 
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    29   1.0  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.6  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 785

 Score =  186 bits (452), Expect = 4e-48
 Identities = 104/223 (46%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
 Frame = -3

Query: 807  FYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFN-- 634
            FYL+KH+GR+L   P +GSAD+   F             R++ + VST    +LLLF   
Sbjct: 576  FYLSKHTGRKLLWYPSMGSADVRVNF-----------KDRKYDLNVSTIASVILLLFQDL 624

Query: 633  -QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAF 457
             +   L +EE+L +T+I   DL R LQSLA  K   +IL+K PK +E+    +FY N+ F
Sbjct: 625  KENQCLIFEEILEKTNIEVGDLKRNLQSLACAK--YKILLKDPKGREVNAGDKFYFNENF 682

Query: 456  TSKLHRVKIQTVA-AKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAE 280
             S L R+KI TVA  + E + ER+ T  KVDE RKH+ +A IVR+MK RK   H  L+AE
Sbjct: 683  VSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAE 742

Query: 279  VTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
            VT QL  RF PSP++IK+RIE LIEREYL R  D+ ++Y Y+A
Sbjct: 743  VTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 734

 Score =  130 bits (314), Expect = 2e-31
 Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 3/221 (1%)
 Frame = -3

Query: 807  FYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFNQ- 631
            FYL+K  G+++S    LG   + A F                 + +S FQ CVLL FN  
Sbjct: 529  FYLSKQVGKKISWYASLGHCIVKARFPLGNKE-----------LSISLFQACVLLQFNNC 577

Query: 630  --RDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAF 457
               + ++Y++L   T++ + DL R LQSL+  +   R L+  PK+K+  P   FYVN+ F
Sbjct: 578  LGGEGISYQDLKKSTELSDIDLTRTLQSLSCARI--RPLVMVPKSKKPSPDTMFYVNEKF 635

Query: 456  TSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEV 277
            T KL+RVKI  +  K E + E  + + +V  DR+ E++A+IVR+MK ++KM H  LV  V
Sbjct: 636  TDKLYRVKINQIYLKEERQ-ENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYV 694

Query: 276  TEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYV 154
               ++ R +P    +K  IE L+E+EYL R  +D  +Y YV
Sbjct: 695  INNVKDRGIPLVSDVKTAIEKLLEKEYLER--EDNDIYTYV 733


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 767

 Score =  120 bits (288), Expect = 3e-28
 Identities = 75/217 (34%), Positives = 115/217 (52%)
 Frame = -3

Query: 813  RSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFN 634
            +++Y + H+GR+LS    L   ++ A                 ++ QVST+QM VLLL+N
Sbjct: 562  QNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVT--------YVFQVSTYQMGVLLLYN 613

Query: 633  QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFT 454
             RD  TYEEL   T +    L   L      K    +L+     K  +P+  + +N+ F 
Sbjct: 614  HRDSYTYEELAKITGLSTDFLTGILNIFLKAK----VLLLGDNDKLGDPNSTYKINENFR 669

Query: 453  SKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVT 274
             K  RV++  +  + E + E  ET   ++EDRK  +++AIVRIMKAR+ + H +LV E  
Sbjct: 670  MKKIRVQLN-LPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETI 728

Query: 273  EQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVY 163
            +Q++ RF P    IK+ I+ LIE+EYL R   D  +Y
Sbjct: 729  DQIKSRFTPKVSDIKQCIDMLIEKEYLERQGRDEYIY 765



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 52  IIPLYK*AFEERFQ*YYYSHSNGKSL 129
           ++PLY     E FQ YYYS  NG+ L
Sbjct: 554 LVPLY-----EGFQNYYYSCHNGRKL 574


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
 Frame = -3

Query: 609 ELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKT-----KEIEPSHQFYVNDAFTSKL 445
           ELL+E  I  K+   + +++   K  +R  +KH +      ++++ +  +   D+F S+L
Sbjct: 117 ELLDE--ILPKEPAGSKEAMQQKKKEKRAALKHYREASDNEEDLKETDLYGDRDSFQSRL 174

Query: 444 HRVKIQTVAAKGESEPER----RETRNKVDEDRKHEIE 343
            + K ++     + E ER    +E RNK++E  K E+E
Sbjct: 175 KQKKQRSEFRASKREMERLERDQELRNKIEERNKKELE 212


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 579 KDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFTSKLHRVKIQTV 421
           +DL+  L+S+   + T+  L KH   K+  P+ + +     +S L+R+ I  +
Sbjct: 8   QDLIWILKSVQSRRSTKGFLQKHSSLKDGSPNKKSFAQPISSSFLNRISITKI 60


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/58 (20%), Positives = 26/58 (44%)
 Frame = -3

Query: 495 IEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIM 322
           +EP+H     D     +   K      + E EP         D+D+KH++++  ++++
Sbjct: 69  LEPTHLINDIDDDNEIIEEKKETEKVEESELEPRYTRVFRDEDDDQKHQLDSEAIKLL 126


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 430 TNGSREGRVGAGTARDPQQGGRGPQARDRSGHR 332
           T GSR GR G+   R    GGRG     R G R
Sbjct: 4   TPGSRGGRGGSRGGRGGFNGGRGGFGGGRGGAR 36


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = -3

Query: 597 ETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYV-NDAFTSKLHRVKIQTV 421
           E   P  D +    S A+ K  ++   K+ K K  + + +    NDA +  +    IQ V
Sbjct: 198 EVSRPSTDTIGV--SSALSKKKKKRNRKNQKKKSTKQNIEATTENDALSESISTPDIQKV 255

Query: 420 AAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAH 298
           A   + + E+    +  +E+R+      ++    A++ M H
Sbjct: 256 AQSEDVDAEQDTVADSKEEERRDIANDDLIVNANAKEPMHH 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,694
Number of Sequences: 5004
Number of extensions: 44937
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)