Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15f02
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0737 - 31328473-31330513,31331015-31331184 236 2e-62
04_04_1339 + 32760424-32760584,32762428-32764462 231 4e-61
08_01_0471 - 4147170-4149207,4150535-4150692 229 2e-60
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 161 6e-40
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 141 7e-34
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 136 1e-32
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 130 1e-30
08_01_0055 - 375343-375567,375672-377540 31 0.83
05_04_0334 - 20341186-20341422,20341509-20341569,20341652-203417... 30 1.9
02_05_0348 - 28162681-28162849,28162946-28163154 30 1.9
03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704... 29 4.4
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567... 29 5.8
08_01_1049 - 10627636-10628041,10630972-10631115,10631205-106318... 28 7.7
02_01_0085 + 610872-611297 28 7.7
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 236 bits (577), Expect = 2e-62
Identities = 121/221 (54%), Positives = 159/221 (71%)
Frame = -3
Query: 813 RSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFN 634
R++YL HSGR+L+ Q +G+AD+ ATFG ++H + VST+QMCVL+LFN
Sbjct: 527 RTYYLGTHSGRRLTWQTNMGTADIKATFGKG----------QKHELNVSTYQMCVLMLFN 576
Query: 633 QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFT 454
D LTY+++ +T IP DL R LQSLA K + +L K P +K+I FY ND FT
Sbjct: 577 STDGLTYKDIEQDTAIPASDLKRCLQSLACVKG-KNVLRKEPMSKDISEDDTFYFNDKFT 635
Query: 453 SKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVT 274
SKL +VKI TV A+ ESEPE++ETR +V+EDRK +IEAAIVRIMK+R+ + H +VAEVT
Sbjct: 636 SKLVKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIVAEVT 695
Query: 273 EQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
+QL+ RF+P+PVVIKKRIE LIERE+L R DRK+Y Y+A
Sbjct: 696 KQLQARFMPNPVVIKKRIESLIEREFLERDKADRKLYRYLA 736
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 231 bits (566), Expect = 4e-61
Identities = 121/221 (54%), Positives = 155/221 (70%)
Frame = -3
Query: 813 RSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFN 634
R+FYL H+GR+L+ Q +G+AD+ ATFG RRH + VST+QMCVL+LFN
Sbjct: 523 RAFYLGTHNGRRLTWQTNMGNADIKATFGG-----------RRHELNVSTYQMCVLMLFN 571
Query: 633 QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFT 454
D LTY ++ T IP DL R LQSLA K + +L K P +K+I FY ND FT
Sbjct: 572 SADGLTYGDIEQATGIPHADLKRCLQSLACVKG-KNVLRKEPMSKDISEDDTFYYNDKFT 630
Query: 453 SKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVT 274
SKL +VKI TV A+ E+EPE+ ETR +V+EDRK +IEAAIVRIMK+R+ + H ++ EVT
Sbjct: 631 SKLVKVKIGTVVAQKETEPEKLETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIITEVT 690
Query: 273 EQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
+QL+ RFLP+PVVIKKRIE LIERE+L R DRK+Y Y+A
Sbjct: 691 KQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKMYRYLA 731
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 229 bits (560), Expect = 2e-60
Identities = 117/221 (52%), Positives = 154/221 (69%)
Frame = -3
Query: 813 RSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFN 634
R FYL H+GR+L+ Q +G+AD+ A FG +H + VST+QMCVL+LFN
Sbjct: 522 RGFYLGTHNGRRLTWQTNMGTADIKAVFGNGS----------KHELNVSTYQMCVLMLFN 571
Query: 633 QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFT 454
D L+Y ++ T IP DL R LQSLA+ K + +L K P +++I FYVND FT
Sbjct: 572 SADCLSYRDIEQTTAIPSADLKRCLQSLALVKG-KNVLRKEPMSRDISDDDNFYVNDKFT 630
Query: 453 SKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVT 274
SKL +VKI TVA + ESEPE+ ETR +V+EDRK +IEAAIVRIMK+R+ + H +V EVT
Sbjct: 631 SKLFKVKIGTVATQKESEPEKMETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNSIVTEVT 690
Query: 273 EQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
+QL+ RF+P+PVVIKKR+E LIERE+L R DRK+Y Y+A
Sbjct: 691 KQLQPRFMPNPVVIKKRVESLIEREFLERDKTDRKLYRYLA 731
>03_06_0221 + 32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 161 bits (391), Expect = 6e-40
Identities = 91/221 (41%), Positives = 136/221 (61%)
Frame = -3
Query: 813 RSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFN 634
+ FYL+K+SGR+L Q LG L A F + + VS FQ VL+LFN
Sbjct: 609 KEFYLSKYSGRRLMWQNSLGHCVLKAEFPKG-----------KKELAVSLFQSVVLMLFN 657
Query: 633 QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFT 454
+L++ ++ T I +K+L R LQSLA GK R+L K PK +++E +F N+ F+
Sbjct: 658 DAQKLSFLDIKESTGIEDKELRRTLQSLACGKV--RVLQKMPKGRDVEDKDEFVFNEEFS 715
Query: 453 SKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVT 274
+ L+R+K+ + K E+ E T +V +DR+++++AAIVRIMK RK ++HTLL+ E+
Sbjct: 716 APLYRIKVNAIQMK-ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELF 774
Query: 273 EQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
+QL+ PS IKKRIE LI+REYL R + ++YNY+A
Sbjct: 775 QQLKFPIKPSD--IKKRIESLIDREYLERDRSNPQIYNYLA 813
>05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 141 bits (341), Expect = 7e-34
Identities = 77/174 (44%), Positives = 106/174 (60%)
Frame = -3
Query: 672 VSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEI 493
V+T+Q +LLLFN DRLTY E++ + ++ + D+VR L SL+ K +IL K P + I
Sbjct: 578 VTTYQAALLLLFNGSDRLTYSEIVTQLNLSDDDVVRLLHSLSCAK--YKILNKEPANRSI 635
Query: 492 EPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKAR 313
P+ F N FT ++ R+KI E+++ VD+DR++ I+A+IVRIMK+R
Sbjct: 636 SPNDVFEFNSKFTDRMRRIKIPLPPVD-----EKKKVVEDVDKDRRYAIDASIVRIMKSR 690
Query: 312 KKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
K M H LVAE EQL F P IKKRIE LI R+YL R D+ VY Y+A
Sbjct: 691 KVMGHQQLVAECVEQLSRMFKPDFKAIKKRIEDLITRDYLEREKDNANVYRYLA 744
>01_04_0017 - 15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 136 bits (330), Expect = 1e-32
Identities = 76/174 (43%), Positives = 105/174 (60%)
Frame = -3
Query: 672 VSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEI 493
V+T+Q +LLLFN DRL+Y E++ + ++ + D+VR L SL+ K +IL K P + I
Sbjct: 584 VTTYQAALLLLFNGVDRLSYSEIVTQLNLSDDDVVRLLHSLSCAK--YKILSKEPNNRSI 641
Query: 492 EPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKAR 313
P+ F N FT KL R+KI E+++ VD+DR++ I+A+IVRIMK+R
Sbjct: 642 SPNDVFEFNSKFTDKLRRLKIPLPPVD-----EKKKVVEDVDKDRRYAIDASIVRIMKSR 696
Query: 312 KKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
K + H LV E EQL F P IKKRIE LI R+YL R D+ VY Y+A
Sbjct: 697 KVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPNVYRYLA 750
>01_04_0018 + 15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 130 bits (315), Expect = 1e-30
Identities = 67/174 (38%), Positives = 107/174 (61%)
Frame = -3
Query: 672 VSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEI 493
++T+Q +LLLFN+ D+L+Y +++++ + + D VR L SL+ K +IL K P + I
Sbjct: 554 LNTYQAALLLLFNEADKLSYSDIVSQLKLSDDDAVRLLHSLSCAK--YKILNKEPSNRVI 611
Query: 492 EPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKAR 313
P +F N FT ++ R+K+ E+++ + V++DR+ I+A++VRIMK+R
Sbjct: 612 SPEDEFEFNSKFTDRMRRIKVPLPQID-----EKKKVVDDVNKDRRFAIDASLVRIMKSR 666
Query: 312 KKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 151
K + H LVAE EQL F P +IK+RIE LI REYL R ++ + Y Y+A
Sbjct: 667 KVLGHQQLVAECVEQLSRMFKPDIKIIKRRIEDLISREYLERDSENAQTYKYLA 720
>08_01_0055 - 375343-375567,375672-377540
Length = 697
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 424 GSREGRVGAGTARDPQQGGRGPQARDRSGHR 332
GS GR GA +++ +QGGRG R + G R
Sbjct: 7 GSALGRAGASSSKRTKQGGRGGAKRTKQGGR 37
>05_04_0334 -
20341186-20341422,20341509-20341569,20341652-20341719,
20341800-20342009,20342714-20342754,20342909-20342958,
20343069-20343157,20343233-20343307,20343498-20343598,
20343758-20343812,20343909-20344025,20344672-20344892,
20345525-20345582,20345706-20345822
Length = 499
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = -2
Query: 424 GSREGRVGAGTARDPQQGG----RGPQARDRSGHRAHHESQEE 308
G +EG GAG A +P GG GP + RA E +E
Sbjct: 451 GLKEGSAGAGVAAEPSNGGGGDTAGPSVKIEMMRRAAREGNDE 493
>02_05_0348 - 28162681-28162849,28162946-28163154
Length = 125
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 480 QFYVNDAFTSKLHRVKIQTVAAKGESEPERRET 382
Q +DA R K+Q AA+GE +P+RR++
Sbjct: 84 QIDADDASEMMKKRAKMQPAAARGEQQPQRRQS 116
>03_05_0713 -
27070063-27070126,27070202-27070290,27070369-27070428,
27071110-27071215,27071309-27071428,27072340-27072476,
27072561-27072647,27073660-27073956
Length = 319
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 648 LLLFNQRDRLTYEELLNETDIPEK 577
++L NQR+ Y++LL TDIP K
Sbjct: 119 MVLPNQRENRGYDDLLQRTDIPAK 142
>04_04_0287 -
24156285-24156389,24156477-24156596,24156654-24156740,
24156905-24157057,24157516-24157635,24157788-24157949,
24158029-24158247,24158574-24158616,24159147-24159210,
24159353-24159458,24159585-24159704,24159831-24159911,
24160008-24160050,24160308-24160369,24160477-24160563,
24161004-24161050,24161144-24161276,24161419-24161487,
24161924-24162010,24162317-24162448
Length = 679
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 435 KIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMK--ARKKMAH 298
K + AKGE + RRE R +ED +I+A + I K A+KK H
Sbjct: 14 KTERKTAKGEEKRARREARKVGEED---DIDAILRSIQKEEAKKKEVH 58
>08_01_1049 -
10627636-10628041,10630972-10631115,10631205-10631869,
10632709-10633110
Length = 538
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = -3
Query: 414 KGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMA 301
KG+++ + +ET+ KV E+ E E V +++A+++ A
Sbjct: 71 KGKAKEKEKETKVKVKEEGGEEKEKGKVEVVEAKRRPA 108
>02_01_0085 + 610872-611297
Length = 141
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +3
Query: 339 PLRSRACGPRP-PCCGSRAVPAP 404
P RSR PRP PCC A AP
Sbjct: 114 PARSRPSSPRPQPCCAESANVAP 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,042,501
Number of Sequences: 37544
Number of extensions: 326706
Number of successful extensions: 1331
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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