Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e24
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    30   2.4  
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135...    29   4.3  
02_05_0326 + 27977888-27977890,27978494-27978569,27978649-27978971     28   7.4  
02_01_0653 - 4856197-4856268,4857464-4857506,4857607-4857661,485...    28   7.4  

>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 427 CHKQCYESGDVIVALSSIVEPSVDLETSGFNAKFTIISVVAP 552
           CH+Q  ESGD I +  S+      LE  G NA  ++ S++ P
Sbjct: 278 CHQQMQESGDTI-SCCSLEGKMARLEVMGSNAMQSLKSILKP 318


>03_02_0750 +
           10909130-10909616,10912257-10912916,10913139-10913544,
           10914376-10914757,10914918-10915679,10916106-10916165,
           10916695-10917105
          Length = 1055

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 688 GTSLHKTVQNPSGLRVSVNVTFVQRPGWVS 777
           G  + K   +   L V  N TF QRPGW++
Sbjct: 406 GNKIWKVSPDGEPLSVIKNATFFQRPGWIN 435


>02_05_0326 + 27977888-27977890,27978494-27978569,27978649-27978971
          Length = 133

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 573 RTGEFLGWSYDGDYCKFSIE 514
           R  EF  W YDG+Y  F+I+
Sbjct: 60  RAAEFWPWPYDGEYYPFAIQ 79


>02_01_0653 -
           4856197-4856268,4857464-4857506,4857607-4857661,
           4857867-4857900,4857989-4858083,4858720-4858780,
           4858858-4858932
          Length = 144

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 714 LNRLMERGSSAPWTHILQ 661
           LNR++  G SAPW H L+
Sbjct: 71  LNRIVPEGRSAPWKHTLE 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,639,109
Number of Sequences: 37544
Number of extensions: 386786
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)