Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e24
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    26   0.35 
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    26   0.35 
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    26   0.35 
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    26   0.35 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.5  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 97  NYNNYNKHNYNKLYYNINYI 116


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 330 NYNNYNKHNYNKLYYNINYI 349


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   HYHNYSKHSINNIFKNSFYL 61
           +Y+NY+KH+ N ++ N  Y+
Sbjct: 330 NYNNYNKHNYNKLYYNINYI 349


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 738 CKCHICATAW 767
           CKCH+C  A+
Sbjct: 43  CKCHLCGKAF 52


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 633 RLVGIHLWPLVIYESTALR 689
           R    H W +++YE +A R
Sbjct: 505 RFFSFHQWGILVYEPSACR 523


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 600  QEDGSSPSWLPRLVGIHLWPLVIYE 674
            Q+ G      P L G+H+ P +IYE
Sbjct: 988  QQYGKRRKEPPWLEGVHVTPELIYE 1012


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,999
Number of Sequences: 438
Number of extensions: 4608
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)