Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15e21
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81040-3|CAB02783.3| 444|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 29 1.7
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 29 1.7
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 29 2.9
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 29 2.9
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 29 2.9
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 29 2.9
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 3.8
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 28 5.0
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 28 5.0
AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical ... 28 5.0
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 27 8.8
>Z81040-3|CAB02783.3| 444|Caenorhabditis elegans Hypothetical
protein C26E1.3 protein.
Length = 444
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = -2
Query: 172 ATAPEFSPKTRDLVTNVPEKHIENVFEKLTNNDLQNLDGAPI 47
++ P + +++ +++P + ++FE + NN+ + + GAPI
Sbjct: 67 SSTPSLATASQNFSSHLPASYSADLFENIENNEHKAISGAPI 108
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 161 RIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESR 60
R +S+D + RSR RKR +K + RS E R
Sbjct: 355 RSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKR 388
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 161 RIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESR 60
R +S+D + RSR RKR +K + RS E R
Sbjct: 355 RSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKR 388
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 140 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 42
R R RK HRKR R + R S R R HKK
Sbjct: 597 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 631
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 140 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 42
R R RK HRKR R + R S R R HKK
Sbjct: 683 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 717
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 140 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 42
R R RK HRKR R + R S R R HKK
Sbjct: 685 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 719
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 140 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 42
R R RK HRKR R + R S R R HKK
Sbjct: 683 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 717
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 170 DCARIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHKK 42
D +R +S+D S RSR+ R+R R + RS + R R H K
Sbjct: 122 DRSRDRSRDR--SRDRSRERSRERERTRSRSRSPQERDRSHSK 162
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 164 ARIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHK 45
+R +S R S RSR R+R R++ +R S SR R +
Sbjct: 407 SRSRSPPRRRSRSRSRTRDRRRPRRSNSRRRSRSRDRQRR 446
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 456 TIVSFPRSFFFQNIFSDIFYVTLKIY 533
TI +F S F+N F DI + +LK+Y
Sbjct: 130 TIYAFLHSHMFENDFRDILHSSLKMY 155
>AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical
protein H27M09.5 protein.
Length = 341
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 149 KDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHKKCCVIL*KTSKKNI 3
K + +K+S K+ R ++ K+ +S RP KK +I K SKKN+
Sbjct: 288 KPPKTLSKKSAKSTRNPLKSPSKRSNSV---RPEKKNKIISKKASKKNV 333
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 325 NHVYLRQHAVCIATGPDPRPVQNQTSAI 242
NH Y +QH + P+P+Q Q S+I
Sbjct: 737 NHQYQQQHPSLPRSASTPQPIQQQQSSI 764
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 325 NHVYLRQHAVCIATGPDPRPVQNQTSAI 242
NH Y +QH + P+P+Q Q S+I
Sbjct: 737 NHQYQQQHPSLPRSASTPQPIQQQQSSI 764
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 466 ETIVTIHDLP*NLYLWCKILKSAEYLGPLRYANI 365
+TI+ I P L+ CK + +L PLR AN+
Sbjct: 123 KTIIGITKAPGELHFLCKFSDDSVHLIPLREANV 156
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 466 ETIVTIHDLP*NLYLWCKILKSAEYLGPLRYANI 365
+TI+ I P L+ CK + +L PLR AN+
Sbjct: 123 KTIIGITKAPGELHFLCKFSDDSVHLIPLREANV 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,978,099
Number of Sequences: 27780
Number of extensions: 252178
Number of successful extensions: 783
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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