Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e19
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    31   0.20 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.62 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    29   0.82 
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    29   1.1  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    29   1.1  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.4  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    28   1.9  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.9  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   4.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   4.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   4.4  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   5.8  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   7.6  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 620 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNER-RKAEEIMHRYREHE 444
           R EQE+  +  LEK++         ++ E   ++ +E+++ + ER R  EE  H+  E  
Sbjct: 107 RLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQR 166

Query: 443 NVEQ 432
            ++Q
Sbjct: 167 RLKQ 170



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = -3

Query: 644 EAFRQWLARKEQEKREKARLEKQK--QHTIPATTPEQREASYRKWLERKRMQNERRKAEE 471
           EA RQ L + E+E+R+K  +EK+K  +  I     ++ + + ++ L+++++  +R++ E 
Sbjct: 124 EAERQRL-KDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEA 182

Query: 470 IMHRYRE 450
              R +E
Sbjct: 183 REKRMKE 189


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 620 RKEQEKREKARLEKQKQ-HTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYREHE 444
           +K+QE   + R EKQKQ         +Q+EA   K    +R++ E  K   I+   +  E
Sbjct: 652 KKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEK--RILEERKRRE 709

Query: 443 NVEQ 432
            +++
Sbjct: 710 KLDK 713



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -3

Query: 620 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKW---LERKRMQNERRKAEEIMHRYRE 450
           ++EQEK+++  LE+QK+        ++RE   +K     +R++M  E+R  EE   R  E
Sbjct: 647 KREQEKKQQ-ELERQKRE--EKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILE 703


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 559 LQPHPNNVRHLTENGWSANE 500
           ++PHP+ ++H+ +NGW   E
Sbjct: 214 IEPHPDVLKHMRKNGWMDRE 233


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 209 SMRGSVSQMYINPVPWQSTT*SSKKFFLHL*MEYFTLKK 93
           S+R  V    ++  PW ST+   +  +L L  EY TLK+
Sbjct: 415 SLRKEVWPFLLSVYPWDSTSEERRVIYLSLQEEYCTLKR 453


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/70 (17%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = -3

Query: 647 QEAFRQWLARKEQEK--REKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAE 474
           +E + +W ARK+Q +   E+ R +K++Q  +     +  +    ++ +++  + +++ AE
Sbjct: 522 EEEYNKWFARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENERWDKKIAE 581

Query: 473 EIMHRYREHE 444
             + ++ +++
Sbjct: 582 IELEQFHDYK 591



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/59 (16%), Positives = 31/59 (52%)
 Frame = -3

Query: 626 LARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYRE 450
           L  K  +  E+   ++    ++ ++  +Q + +Y  W ++++ +  R+K EE+  ++ +
Sbjct: 23  LGLKPLDISEEKPQKELSDASVKSSYVDQEQQAYENWKKQEQEEINRKKEEELKSKFEK 81


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 647 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPE 543
           QE FR     +E+EKR  A   K ++ +IPA T E
Sbjct: 251 QEQFRLERENREKEKRRIAAQRKLEEASIPAFTEE 285


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -3

Query: 623 ARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYREHE 444
           A  +++  EKARLE ++     A    +REA  +   +R+  +  +R+AEE   R  E E
Sbjct: 543 AEAKRKAEEKARLEAEENAKREAEEQAKREAEEK--AKREAEEKAKREAEEKAKREAE-E 599

Query: 443 NVEQ 432
           N ++
Sbjct: 600 NAKR 603



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = -3

Query: 647 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 471
           ++A R+   + ++E  E A+ E +++    A    +REA  +  ++R+  +N +RKAEE
Sbjct: 647 EKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEK--VKRETEENAKRKAEE 703



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = -3

Query: 647 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEI 468
           ++A R+   + ++E  EKA+ E +++    A    +REA  +   +R+  +  +R+AEE 
Sbjct: 567 EQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEK--AKREAEEKAKREAEEK 624

Query: 467 MHRYREHE 444
             R  E +
Sbjct: 625 AKREAEEK 632



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = -3

Query: 647 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEI 468
           ++A R+   + ++E  EKA+ E +++    A    +REA  +   +R+  +  +R+AEE 
Sbjct: 607 EKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK--AKREAEEKAKREAEEN 664

Query: 467 MHRYREHE 444
             R  E +
Sbjct: 665 AKREAEEK 672


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 620 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMH--RYREH 447
           RK +E+R + R  +  Q      +  ++ +S ++   R+  +N+R    E  H  RYR  
Sbjct: 165 RKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHR 224

Query: 446 ENVE 435
           +  +
Sbjct: 225 DKYD 228


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -3

Query: 614 EQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYRE 450
           EQE+ +K  +E++ +    A   EQRE +  K   ++R+Q ER   EEI  +  E
Sbjct: 811 EQEEAQKRAIEERTRAAREAKEREQREMA-EKLERQRRIQQER--DEEISRKLAE 862


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 676 KSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPHPNNVRHLTENGW 512
           KS  +      +LF+ G R  +   + R VW++K N  ++      ++H    GW
Sbjct: 470 KSMKLINNNPSRLFLHGERIHNGDLSNRTVWRSKTNN-AITVEELALQHYQSIGW 523


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 748 LIVKMGLTLFDYPWHLFLRPQLQKKSENVTRKRNRKLFVSGWRARS-KKNAKRRVWKNKN 572
           LI +  + L+D P H ++  +L+K+    +  +N K+FV+ +         K   W    
Sbjct: 525 LIDQHPVILYD-PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPE 583

Query: 571 NT 566
           NT
Sbjct: 584 NT 585


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 664  VTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH-PNNVRHLTENGW 512
            + ++R+ K       AR  +   +R W +    LSL PH  +N++ L ++G+
Sbjct: 1105 IEKERHTKQLAERLAARLDRCKTQRQWDHVVYALSLLPHKADNIQKLIDDGY 1156


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -3

Query: 611 QEKREKARLEKQKQHTIPATTPEQREASYRKWLER 507
           Q K EK+   K K HT  ATT   R +S  K L R
Sbjct: 157 QPKAEKSTTSKSKSHTTTATTHTSR-SSKSKGLPR 190


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
            Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 700  FLRPQLQKKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 548
            ++          ++  RN    V+  +A +    KRR+ KN+NN    + H
Sbjct: 881  YIDQHFASSKSGISNGRNNNKEVNLTKAENVGIKKRRIMKNENNIYDFEDH 931


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = -3

Query: 635 RQWLARKEQEKREKARLEKQKQHTIPATTPE---QREASYR-KWLE 510
           R+++  K+++K+EK R+E++ +    A   +   Q++ + R KW E
Sbjct: 388 REYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKE 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,566
Number of Sequences: 5004
Number of extensions: 56495
Number of successful extensions: 226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)